RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZNF280AP59817 542 aaPredicted RBP23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 PSMC6P62333 389 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 CACNB1Q02641 598 aaPredicted RBP23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 TNIP1Q15025 636 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 VWA3BQ502W6 1294 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 FKBP15Q5T1M5 1219 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 WDR18Q9BV38 432 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 IRX2Q9BZI1 471 aaPredicted RBP23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 PITPNM2Q9BZ72 1349 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 TEPSINQ96N21 525 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 TBC1D7Q9P0N9 293 aa23.44■■□□□ 1.34
CCDC88B-208ENST00000492980 MEIS1O00470 390 aa23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 EGFRP00533 1210 aa23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 TRIM21P19474 475 aaKnown RBP23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 MAN2A1Q16706 1144 aa23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 FIGNQ5HY92 759 aa23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 WDR59Q6PJI9 974 aa23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 AGPAT5Q9NUQ2 364 aa23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 DNM3Q9UQ16 869 aa23.43■■□□□ 1.34
CCDC88B-208ENST00000492980 KRT18P05783 430 aaKnown RBP23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 RAD51AP2Q09MP3 1159 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 HERC4Q5GLZ8 1057 aaPredicted RBP23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 LDHDQ86WU2 507 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 SYT2Q8N9I0 419 aaPredicted RBP23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 ZNF341Q9BYN7 854 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 NDST4Q9H3R1 872 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 RBBP6Q7Z6E9 1792 aaKnown RBP23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 EML1O00423 815 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 POLD1P28340 1107 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 PTGER2P43116 358 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 PABPC4Q13310 644 aaKnown RBP eCLIP23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 ELF2Q15723 593 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 MEA1Q16626 185 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 SAMD1Q6SPF0 538 aaPredicted RBP23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 SLF1Q9BQI6 1058 aa23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 POLR3CQ9BUI4 534 aaPredicted RBP23.42■■□□□ 1.34
CCDC88B-208ENST00000492980 A0A1W2PQJ5 194 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 MAP3K9P80192 1104 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 ZBED6P86452 979 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 TSR1Q2NL82 804 aaKnown RBP23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 PCMTD1Q96MG8 357 aaPredicted RBP23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 FEZ1Q99689 392 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 EIF2AK1Q9BQI3 630 aaKnown RBP23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 EPN1Q9Y6I3 576 aaPredicted RBP23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 KIF5CO60282 957 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 NDUFA10O95299 355 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 INPP5BP32019 993 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 GIT2Q14161 759 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 SCFD1Q8WVM8 642 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 EHMT1Q9H9B1 1298 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 CGNQ9P2M7 1197 aaKnown RBP23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 SIK3Q9Y2K2 1263 aa23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 REXO2Q9Y3B8 237 aaKnown RBP23.41■■□□□ 1.34
CCDC88B-208ENST00000492980 RPS12P25398 132 aaKnown RBP23.4■■□□□ 1.34
CCDC88B-208ENST00000492980 ARHGAP25P42331 645 aa23.4■■□□□ 1.34
CCDC88B-208ENST00000492980 FKBP3Q00688 224 aaKnown RBP23.4■■□□□ 1.34
CCDC88B-208ENST00000492980 CYP4A11Q02928 519 aa23.4■■□□□ 1.34
CCDC88B-208ENST00000492980 TNFAIP1Q13829 316 aa23.4■■□□□ 1.34
CCDC88B-208ENST00000492980 UBXN2AP68543 259 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 ARHGAP29Q52LW3 1261 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 OTOP1Q7RTM1 612 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 NELFCDQ8IXH7 590 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 SLC5A5Q92911 643 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 IQCDQ96DY2 449 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 MTFR1LQ9H019 292 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 DEFB129Q9H1M3 183 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 KCTD10Q9H3F6 313 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 MRFAP1Q9Y605 127 aa23.39■■□□□ 1.34
CCDC88B-208ENST00000492980 PSMD10O75832 226 aa23.39■■□□□ 1.33
CCDC88B-208ENST00000492980 REEP2Q9BRK0 252 aa23.39■■□□□ 1.33
CCDC88B-208ENST00000492980 EMILIN3Q9NT22 766 aa23.39■■□□□ 1.33
CCDC88B-208ENST00000492980 COL4A3BPQ9Y5P4 624 aa23.39■■□□□ 1.33
CCDC88B-208ENST00000492980 ZNF536O15090 1300 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 TRAF5O00463 557 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 ICAM1P05362 532 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 LRCH2Q5VUJ6 765 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 SLC30A10Q6XR72 485 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 CEP63Q96MT8 703 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 CARD6Q9BX69 1037 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 ZHX3Q9H4I2 956 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 RGL1Q9NZL6 768 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 KIF20AO95235 890 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 ABL1P00519 1130 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 PPP2R5CQ13362 524 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 ERCC6LQ2NKX8 1250 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 CEP55Q53EZ4 464 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 KCTD17Q8N5Z5 321 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 AGBL1Q96MI9 1066 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 HSD17B14Q9BPX1 270 aa23.38■■□□□ 1.33
CCDC88B-208ENST00000492980 WDR46O15213 610 aaKnown RBP23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 EYA4O95677 639 aa23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 ZC3H3Q8IXZ2 948 aaKnown RBP23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 MNS1Q8NEH6 495 aa23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 BHMT2Q9H2M3 363 aa23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 PPP1R1BQ9UD71 204 aaPredicted RBP23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 CCPG1Q9ULG6 757 aa23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 ASTN2O75129 1339 aaPredicted RBP23.37■■□□□ 1.33
CCDC88B-208ENST00000492980 GMPSP49915 693 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 HSD17B4P51659 736 aa23.36■■□□□ 1.33
CCDC88B-208ENST00000492980 ZNF569Q5MCW4 686 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms