RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 KIAA1755Q5JYT7 1200 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 CYP26C1Q6V0L0 522 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 ZNF710Q8N1W2 664 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 ERMNQ8TAM6 284 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 ACER1Q8TDN7 264 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 DDX12PQ92771 950 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 NUP88Q99567 741 aaPredicted RBP11.96□□□□□ -0.49
USP4-214ENST00000491791 TUBB2BQ9BVA1 445 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 VPS16Q9H269 839 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 ABHD10Q9NUJ1 306 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 TAB2Q9NYJ8 693 aa11.96□□□□□ -0.49
USP4-214ENST00000491791 MAP3K20Q9NYL2 800 aaKnown RBP11.96□□□□□ -0.49
USP4-214ENST00000491791 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.96□□□□□ -0.49
USP4-214ENST00000491791 MRPL11Q9Y3B7 192 aaKnown RBP11.96□□□□□ -0.49
USP4-214ENST00000491791 CLRN2A0PK11 232 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 WNT10BO00744 389 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 KIF20AO95235 890 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 HNRNPH3P31942 346 aaKnown RBP11.95□□□□□ -0.5
USP4-214ENST00000491791 SLC12A3P55017 1021 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 NOGQ13253 232 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 KIF4BQ2VIQ3 1234 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 RAD9BQ6WBX8 426 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 SYT10Q6XYQ8 523 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 TOGARAM2Q6ZUX3 1019 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 MICALL2Q8IY33 904 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 SYT2Q8N9I0 419 aaPredicted RBP11.95□□□□□ -0.5
USP4-214ENST00000491791 OR8K1Q8NGG5 319 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 LPAR1Q92633 364 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 TEPSINQ96N21 525 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 TUBGCP2Q9BSJ2 902 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 MAF1Q9H063 256 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 MYO1AQ9UBC5 1043 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 VAV3Q9UKW4 847 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 MAPK8IP1Q9UQF2 711 aa11.95□□□□□ -0.5
USP4-214ENST00000491791 FAM86B1E9PN63 330 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 MARCH6O60337 910 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 GNA14O95837 355 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 FAM86B2P0C5J1 330 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 PLA2G4BP0C869 781 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 SPATA31C1P0DKV0 1188 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 FDX1P10109 184 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 CYP11B2P19099 503 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 GOLGA8FQ08AF8 430 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 NCBP1Q09161 790 aaKnown RBP11.94□□□□□ -0.5
USP4-214ENST00000491791 GOLGA8DPQ0D2H9 430 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 COASYQ13057 564 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 PPP2R5CQ13362 524 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 TNFAIP1Q13829 316 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 B3GNT9Q6UX72 402 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 PPP4R3CPQ6ZMV5 832 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 LRRC55Q6ZSA7 311 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 NIPA1Q7RTP0 329 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 CCDC65Q8IXS2 484 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 MYOCDQ8IZQ8 938 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 TRPM4Q8TD43 1214 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 SLC5A5Q92911 643 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 CNOT6LQ96LI5 555 aaKnown RBP11.94□□□□□ -0.5
USP4-214ENST00000491791 CEP63Q96MT8 703 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 EHMT1Q9H9B1 1298 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 MYOZ2Q9NPC6 264 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 DNAI1Q9UI46 699 aa11.94□□□□□ -0.5
USP4-214ENST00000491791 ZBTB12Q9Y330 459 aaPredicted RBP11.94□□□□□ -0.5
USP4-214ENST00000491791 LUC7L2Q9Y383 392 aaKnown RBP11.94□□□□□ -0.5
USP4-214ENST00000491791 RPTORQ8N122 1335 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 TTC26A0AVF1 554 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 GCOM1H8Y6P7 765 aaPredicted RBP11.93□□□□□ -0.5
USP4-214ENST00000491791 RNF225M0QZC1 329 aaPredicted RBP11.93□□□□□ -0.5
USP4-214ENST00000491791 WDR46O15213 610 aaKnown RBP11.93□□□□□ -0.5
USP4-214ENST00000491791 FANCGO15287 622 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 MSH4O15457 936 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 MED24O75448 989 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 PSMD10O75832 226 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 POLR2MP0CAP2 368 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 BCRP11274 1271 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 KRT9P35527 623 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 HSD17B4P51659 736 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 HIRAP54198 1017 aaPredicted RBP11.93□□□□□ -0.5
USP4-214ENST00000491791 HUNKP57058 714 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 MAP3K9P80192 1104 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 ZBED6P86452 979 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 MLLT1Q03111 559 aaPredicted RBP11.93□□□□□ -0.5
USP4-214ENST00000491791 TBC1D8BQ0IIM8 1120 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 MAN2A1Q16706 1144 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 PTPN21Q16825 1174 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 BMT2Q1RMZ1 405 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 EDRF1Q3B7T1 1238 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 FAM26FQ5R3K3 315 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 FAM83BQ5T0W9 1011 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 CCDC84Q86UT8 332 aaPredicted RBP11.93□□□□□ -0.5
USP4-214ENST00000491791 CATSPER3Q86XQ3 398 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 C2orf69Q8N8R5 385 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 KIFC2Q96AC6 838 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 DCPSQ96C86 337 aaKnown RBP11.93□□□□□ -0.5
USP4-214ENST00000491791 TSG101Q99816 390 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 HSD17B14Q9BPX1 270 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 TMEM39BQ9GZU3 492 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 KIAA1683Q9H0B3 1180 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 TUFT1Q9NNX1 390 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 SLC39A2Q9NP94 309 aa11.93□□□□□ -0.5
USP4-214ENST00000491791 PANK4Q9NVE7 773 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms