RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PCDHA12Q9UN75 941 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 AGTPBP1Q9UPW5 1226 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 NFE2L3Q9Y4A8 694 aa13.6□□□□□ -0.23
HDAC6-230ENST00000488543 CYP2C8P10632 490 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 STAT3P40763 770 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 RPS6P62753 249 aaKnown RBP13.59□□□□□ -0.23
HDAC6-230ENST00000488543 SPIRE1Q08AE8 756 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 SNAPC2Q13487 334 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 KMT5BQ4FZB7 885 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 HYIQ5T013 277 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 KCNK18Q7Z418 384 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 PAGR1Q9BTK6 254 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 TRIM9Q9C026 710 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 TXNRD2Q9NNW7 524 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 GDAQ9Y2T3 454 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 IGLV3-22A0A075B6J6 115 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 TBX3O15119 743 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 HSD17B4P51659 736 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 HERVK_113P62684 666 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 FKBP1BP68106 108 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 KRT79Q5XKE5 535 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 SLC30A10Q6XR72 485 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 LBX2Q6XYB7 198 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 SYNRGQ9UMZ2 1314 aa13.59□□□□□ -0.23
HDAC6-230ENST00000488543 KIF3CO14782 793 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 MARCH6O60337 910 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 FDX1P10109 184 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 GHRHRQ02643 423 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 MCM6Q14566 821 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 Q3C1V9 767 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 KLHL10Q6JEL2 608 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 SYT10Q6XYQ8 523 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 SLFN12Q8IYM2 578 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 RAD54LQ92698 747 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 PPP1R13BQ96KQ4 1090 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 TAAR1Q96RJ0 339 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 TEX13BQ9BXU2 312 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 PAXBP1Q9Y5B6 917 aa13.58□□□□□ -0.23
HDAC6-230ENST00000488543 MSH4O15457 936 aa13.58□□□□□ -0.24
HDAC6-230ENST00000488543 RHOBTB3O94955 611 aa13.58□□□□□ -0.24
HDAC6-230ENST00000488543 STX17P56962 302 aa13.58□□□□□ -0.24
HDAC6-230ENST00000488543 BAATQ14032 418 aaPredicted RBP13.58□□□□□ -0.24
HDAC6-230ENST00000488543 FASTKD5Q7L8L6 764 aaKnown RBP13.58□□□□□ -0.24
HDAC6-230ENST00000488543 IL31RAQ8NI17 732 aa13.58□□□□□ -0.24
HDAC6-230ENST00000488543 SYTL5Q8TDW5 730 aaPredicted RBP13.58□□□□□ -0.24
HDAC6-230ENST00000488543 BRI3BPQ8WY22 251 aa13.58□□□□□ -0.24
HDAC6-230ENST00000488543 TMX1Q9H3N1 280 aa13.58□□□□□ -0.24
HDAC6-230ENST00000488543 SAMSN1Q9NSI8 373 aaKnown RBP13.58□□□□□ -0.24
HDAC6-230ENST00000488543 CTNND2Q9UQB3 1225 aa13.58□□□□□ -0.24
HDAC6-230ENST00000488543 CCL15-CCL14A0A0B4J2E2 113 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 MYMKA6NI61 221 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 SEMA3FQ13275 785 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 CCL15Q16663 113 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 SPATA1Q5VX52 437 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 SPRYD7Q5W111 196 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 RNF207Q6ZRF8 634 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 INTS13Q9NVM9 706 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 RBPJLQ9UBG7 517 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 VAV3Q9UKW4 847 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 BTBD19C9JJ37 291 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 SLC26A4O43511 780 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 PRCPP42785 496 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 DMTNQ08495 405 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 MCF2L2Q86YR7 1114 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 LARP4BQ92615 738 aaKnown RBP13.57□□□□□ -0.24
HDAC6-230ENST00000488543 CDK5RAP3Q96JB5 506 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 FAM20AQ96MK3 541 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 PTPN18Q99952 460 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 MYPNQ86TC9 1320 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 RPTORQ8N122 1335 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 CENPFP49454 3210 aa13.57□□□□□ -0.24
HDAC6-230ENST00000488543 UNCXA6NJT0 531 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 ATP2A1O14983 1001 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 CNMDO75829 334 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 SFPQP23246 707 aaKnown RBP eCLIP13.56□□□□□ -0.24
HDAC6-230ENST00000488543 CCT6AP40227 531 aaKnown RBP13.56□□□□□ -0.24
HDAC6-230ENST00000488543 OAZ1P54368 228 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 CDKAL1Q5VV42 579 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 SV2BQ7L1I2 683 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 SAPCD2Q86UD0 394 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 ADSSL1Q8N142 457 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 GIMAP8Q8ND71 665 aaPredicted RBP13.56□□□□□ -0.24
HDAC6-230ENST00000488543 RWDD2AQ9UIY3 292 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 PDHXO00330 501 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 COBLO75128 1261 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 MED24O75448 989 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 EIF2AK2P19525 551 aaKnown RBP13.56□□□□□ -0.24
HDAC6-230ENST00000488543 ZNF76P36508 570 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 ZNF157P51786 506 aaPredicted RBP13.56□□□□□ -0.24
HDAC6-230ENST00000488543 ASIC1P78348 528 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 AMPD3Q01432 767 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 DHX8Q14562 1220 aaKnown RBP13.56□□□□□ -0.24
HDAC6-230ENST00000488543 CNNM4Q6P4Q7 775 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 A1CFQ9NQ94 594 aaKnown RBP13.56□□□□□ -0.24
HDAC6-230ENST00000488543 KDM3AQ9Y4C1 1321 aa13.56□□□□□ -0.24
HDAC6-230ENST00000488543 LOC285556D6RIA3 1793 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 GTF2A2P52657 109 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 UBASH3AP57075 661 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 FBXO38Q6PIJ6 1188 aa13.55□□□□□ -0.24
HDAC6-230ENST00000488543 APTXQ7Z2E3 356 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms