RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NOVA2Q9UNW9 492 aaKnown RBP17.83■□□□□ 0.44
COL7A1-210ENST00000487017 CAPN9O14815 690 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 EIF3BP55884 814 aaKnown RBP17.83■□□□□ 0.44
COL7A1-210ENST00000487017 UBXN2AP68543 259 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 CUL1Q13616 776 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 DIXDC1Q155Q3 683 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 PPP4R3CPQ6ZMV5 832 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 DYNLL2Q96FJ2 89 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 WDR17Q8IZU2 1322 aa17.83■□□□□ 0.44
COL7A1-210ENST00000487017 HMGB1P1B2RPK0 211 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-210ENST00000487017 ZKSCAN8Q15776 578 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-210ENST00000487017 ACTR5Q9H9F9 607 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-210ENST00000487017 KANSL2Q9H9L4 492 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 GDAQ9Y2T3 454 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 PPP1R2P3Q6NXS1 205 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 TBC1D10CQ8IV04 446 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 ATP6V0A1Q93050 837 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 TMOD1P28289 359 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 PDE1CQ14123 709 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-210ENST00000487017 PPP2R5AQ15172 486 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 CCDC144BQ3MJ40 725 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 TCP11Q8WWU5 503 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 SCYL1Q96KG9 808 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 UBE2TQ9NPD8 197 aaPredicted RBP17.82■□□□□ 0.44
COL7A1-210ENST00000487017 IQGAP3Q86VI3 1631 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 NT5C2P49902 561 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 TMED2Q15363 201 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 TMTC3Q6ZXV5 915 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 SPICE1Q8N0Z3 855 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 TTLL11Q8NHH1 800 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 DR1Q01658 176 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 MECOMQ03112 1051 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 EPHA10Q5JZY3 1008 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 FMO2Q99518 471 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 PCIF1Q9H4Z3 704 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 SERPINB13Q9UIV8 391 aa17.82■□□□□ 0.44
COL7A1-210ENST00000487017 CC2D1AQ6P1N0 951 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-210ENST00000487017 CSRNP1Q96S65 589 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 BRIP1Q9BX63 1249 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 VCX3AQ9NNX9 186 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 SEPT9Q9UHD8 586 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-210ENST00000487017 IGKV5-2P06315 115 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 GLE1Q53GS7 698 aaKnown RBP17.81■□□□□ 0.44
COL7A1-210ENST00000487017 FAM160B1Q5W0V3 765 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 DCAF15Q66K64 600 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 KMT5AQ9NQR1 393 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 HNRNPH2P55795 449 aaKnown RBP17.81■□□□□ 0.44
COL7A1-210ENST00000487017 ADCY1Q08828 1119 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 CYP4F22Q6NT55 531 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 AP1M1Q9BXS5 423 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 ALDH8A1Q9H2A2 487 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-210ENST00000487017 NFU1Q9UMS0 254 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 NEDD4P46934 1319 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 USP17L3A6NCW0 530 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 USP17L4A6NCW7 530 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 LGALS16A8MUM7 142 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 PPEF1O14829 653 aaPredicted RBP17.81■□□□□ 0.44
COL7A1-210ENST00000487017 USP17L1Q7RTZ2 530 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 PARVGQ9HBI0 331 aa17.81■□□□□ 0.44
COL7A1-210ENST00000487017 A6NJR5 290 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 SART1O43290 800 aaKnown RBP17.8■□□□□ 0.44
COL7A1-210ENST00000487017 TRIM42Q8IWZ5 723 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 KLHL29Q96CT2 875 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 PAGR1Q9BTK6 254 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 RASGRF2O14827 1237 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 UBE2SQ16763 222 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 NME8Q8N427 588 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 SLCO1A2P46721 670 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 SPOUT1Q5T280 376 aaKnown RBP17.8■□□□□ 0.44
COL7A1-210ENST00000487017 DGKHQ86XP1 1220 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 CCHCR1Q8TD31 782 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 ZMYND12Q9H0C1 365 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 CYB5R4Q7L1T6 521 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 DHX40Q8IX18 779 aaKnown RBP17.8■□□□□ 0.44
COL7A1-210ENST00000487017 MRPL47Q9HD33 250 aaKnown RBP17.8■□□□□ 0.44
COL7A1-210ENST00000487017 DBN1Q16643 649 aa17.8■□□□□ 0.44
COL7A1-210ENST00000487017 PRPF31Q8WWY3 499 aaKnown RBP17.8■□□□□ 0.44
COL7A1-210ENST00000487017 KRT1P04264 644 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 SERPINB6P35237 376 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 ALKBH5Q6P6C2 394 aaKnown RBP17.79■□□□□ 0.44
COL7A1-210ENST00000487017 ZNF277Q9NRM2 450 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-210ENST00000487017 CD2APQ9Y5K6 639 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 MSH2P43246 934 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 FAM133BQ5BKY9 247 aaKnown RBP17.79■□□□□ 0.44
COL7A1-210ENST00000487017 MB21D2Q8IYB1 491 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-210ENST00000487017 PNMA6FA0A0J9YX94 578 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 LRRD1A4D1F6 860 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 BMP3P12645 472 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 E2F5Q15329 346 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 UNC13DQ70J99 1090 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 ADAMTS1Q9UHI8 967 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 ANO9A1A5B4 782 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 CDC37Q16543 378 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-210ENST00000487017 ADAM21Q9UKJ8 722 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 CSADQ9Y600 493 aa17.79■□□□□ 0.44
COL7A1-210ENST00000487017 CCDC188H7C350 402 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 RPSAP08865 295 aaKnown RBP17.78■□□□□ 0.44
COL7A1-210ENST00000487017 PDE1BQ01064 536 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 TMC4Q7Z404 712 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 FLAD1Q8NFF5 587 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms