RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 BAZ2BQ9UIF8 2168 aaKnown RBP19.44■□□□□ 0.7
VIM-205ENST00000485947 SCN10AQ9Y5Y9 1956 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 MEIS2O14770 477 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 PFKMP08237 780 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 EPHB4P54760 987 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 CELF3Q5SZQ8 465 aaKnown RBP19.43■□□□□ 0.7
VIM-205ENST00000485947 MYSM1Q5VVJ2 828 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 PCNX4Q63HM2 1172 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 PHKBQ93100 1093 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 GLT8D2Q9H1C3 349 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 TRPV6Q9H1D0 765 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 IL23AQ9NPF7 189 aa19.43■□□□□ 0.7
VIM-205ENST00000485947 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.42■□□□□ 0.7
VIM-205ENST00000485947 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.42■□□□□ 0.7
VIM-205ENST00000485947 PITPNM1O00562 1244 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 CSF2RAP15509 400 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 NEDD9Q14511 834 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 RASIP1Q5U651 963 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 PPP1R18Q6NYC8 613 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 GIMAP8Q8ND71 665 aaPredicted RBP19.42■□□□□ 0.7
VIM-205ENST00000485947 CDHR1Q96JP9 859 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 SENP7Q9BQF6 1050 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 PPP1R12CQ9BZL4 782 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 KIAA1217Q5T5P2 1943 aa19.42■□□□□ 0.7
VIM-205ENST00000485947 FIBPO43427 364 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 ZSCAN22P10073 491 aaPredicted RBP19.41■□□□□ 0.7
VIM-205ENST00000485947 CYP2C18P33260 490 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 RFC2P35250 354 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 BFSP2Q13515 415 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 TMEM240Q5SV17 173 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 NLRX1Q86UT6 975 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 IL31RAQ8NI17 732 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 PIBF1Q8WXW3 757 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 GUCD1Q96NT3 240 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 ALG1Q9BT22 464 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 EHMT1Q9H9B1 1298 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 PRDM6Q9NQX0 595 aa19.41■□□□□ 0.7
VIM-205ENST00000485947 VPS37CA5D8V6 355 aaPredicted RBP19.4■□□□□ 0.7
VIM-205ENST00000485947 SPATA31C2B4DYI2 1134 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 H3BQV1 296 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 MAFGO15525 162 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 PARNO95453 639 aaKnown RBP19.4■□□□□ 0.7
VIM-205ENST00000485947 F2P00734 622 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 MRPS9P82933 396 aaKnown RBP19.4■□□□□ 0.7
VIM-205ENST00000485947 PKP1Q13835 747 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 FAM47CQ5HY64 1035 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 ZNF697Q5TEC3 545 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 USP17L6PQ6QN14 398 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 C16orf59Q7L2K0 433 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 CCDC155Q8N6L0 562 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 HERVK_113Q902F9 699 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 KAT2BQ92831 832 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 C8orf76Q96K31 380 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 SPATA33Q96N06 139 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.4■□□□□ 0.72e-7■■■■□ 26.5
VIM-205ENST00000485947 MLXIPQ9HAP2 919 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 TRMT13Q9NUP7 481 aaKnown RBP19.4■□□□□ 0.7
VIM-205ENST00000485947 MTMR6Q9Y217 621 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 ZDHHC9Q9Y397 364 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 MUC3AQ02505 3323 aa19.4■□□□□ 0.7
VIM-205ENST00000485947 SPDYE3A6NKU9 549 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 HAS3O00219 553 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 DTNBO60941 627 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 GGPS1O95749 300 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 FGBP02675 491 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 XBP1P17861 261 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 UBA1P22314 1058 aaKnown RBP19.39■□□□□ 0.69
VIM-205ENST00000485947 TRIM29Q14134 588 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 METTL7BQ6UX53 244 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 FAM177A1Q8N128 213 aaPredicted RBP19.39■□□□□ 0.69
VIM-205ENST00000485947 CMTR1Q8N1G2 835 aaKnown RBP19.39■□□□□ 0.69
VIM-205ENST00000485947 CCDC82Q8N4S0 544 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 RETREG2Q8NC44 543 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 CAGE1Q8TC20 777 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 GPRASP2Q96D09 838 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 NOD1Q9Y239 953 aa19.39■□□□□ 0.69
VIM-205ENST00000485947 PPFIA3O75145 1194 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 F13A1P00488 732 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 FOSP01100 380 aaPredicted RBP19.38■□□□□ 0.69
VIM-205ENST00000485947 ZNF365Q70YC5 407 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 HEATR3Q7Z4Q2 680 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 C7orf31Q8N865 590 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 FBXO18Q8NFZ0 1043 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 GTF2IRD1Q9UHL9 959 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 ATP6V1DQ9Y5K8 247 aa19.38■□□□□ 0.69
VIM-205ENST00000485947 V9GY48 417 aaPredicted RBP19.38■□□□□ 0.69
VIM-205ENST00000485947 PSEN2P49810 448 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 SP2Q02086 613 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 RBL2Q08999 1139 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 PKN1Q16512 942 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 PTGISQ16647 500 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 PFKFB3Q16875 520 aaPredicted RBP19.37■□□□□ 0.69
VIM-205ENST00000485947 HSDL1Q3SXM5 330 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 MCTP2Q6DN12 878 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 AFAP1L1Q8TED9 768 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 TNPO1Q92973 898 aaKnown RBP19.37■□□□□ 0.69
VIM-205ENST00000485947 WNT8AQ9H1J5 351 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 RIC8AQ9NPQ8 531 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 MYH15Q9Y2K3 1946 aa19.37■□□□□ 0.69
VIM-205ENST00000485947 NOP56O00567 594 aaKnown RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms