RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 VTI1AQ96AJ9 217 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ZMYND12Q9H0C1 365 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 PLEKHA4Q9H4M7 779 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 CAPN11Q9UMQ6 739 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 E9PMD0 336 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 SNAP25P60880 206 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 COL9A3Q14050 684 aaPredicted RBP16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ZSCAN26Q16670 478 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ZNF772Q68DY9 489 aaPredicted RBP16.01■□□□□ 0.15
HDAC6-220ENST00000477528 WDR24Q96S15 920 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 IKBKGQ9Y6K9 419 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ANO9A1A5B4 782 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 BAG6P46379 1132 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 GUCY2FP51841 1108 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 CCDC93Q567U6 631 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 CCDC121Q6ZUS5 278 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 SLC17A8Q8NDX2 589 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 CNKSR2Q8WXI2 1034 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 C7orf25Q9BPX7 421 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 CEP72Q9P209 647 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ECE2O60344 883 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 FCER1AP12319 257 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 USP11P51784 963 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 ZNF543Q08ER8 600 aa16.01■□□□□ 0.15
HDAC6-220ENST00000477528 FAM196BA6NMK8 535 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 H0YCG3 227 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 RGL2O15211 777 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 DAGLBQ8NCG7 672 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 ANKRD7Q92527 254 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 MXD3Q9BW11 206 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 GCNT4Q9P109 453 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 RAD17O75943 681 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 ANKRD40Q6AI12 368 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 FAM217BQ9NTX9 383 aaPredicted RBP16■□□□□ 0.15
HDAC6-220ENST00000477528 PRPF6O94906 941 aaKnown RBP16■□□□□ 0.15
HDAC6-220ENST00000477528 DMP1Q13316 513 aaPredicted RBP16■□□□□ 0.15
HDAC6-220ENST00000477528 MAD2L2Q9UI95 211 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 PPP1R3GB7ZBB8 358 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 F5H6K3 240 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 GUCY2DQ02846 1103 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 KLRC3Q07444 240 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 CC2D1AQ6P1N0 951 aaPredicted RBP16■□□□□ 0.15
HDAC6-220ENST00000477528 MICALL1Q8N3F8 863 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 TDRD3Q9H7E2 651 aaKnown RBP16■□□□□ 0.15
HDAC6-220ENST00000477528 ABCB6Q9NP58 842 aa16■□□□□ 0.15
HDAC6-220ENST00000477528 POTEB3A0JP26 581 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 POTECB2RU33 542 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 TNNI1P19237 187 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 C2orf54Q08AI8 447 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 POTEBQ6S5H4 581 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 TMEM60Q9H2L4 133 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 TMEM206Q9H813 350 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 SPATA31A6Q5VVP1 1343 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 NALCNQ8IZF0 1738 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 EIF3CLB5ME19 914 aaKnown RBP15.99■□□□□ 0.15
HDAC6-220ENST00000477528 TADA3O75528 432 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 EPHB4P54760 987 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 APBA1Q02410 837 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 TRPC3Q13507 836 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 NCAPHQ15003 741 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 CCDC105Q8IYK2 499 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 ACCSQ96QU6 501 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 EIF3CQ99613 913 aaKnown RBP15.99■□□□□ 0.15
HDAC6-220ENST00000477528 LRRC53A6NM62 1247 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 ATP2C2O75185 946 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 PDHBP11177 359 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 PTPROQ16827 1216 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 ZNF365Q70YC5 407 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 RASGRP2Q7LDG7 609 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 CDAN1Q8IWY9 1227 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 GIMAP8Q8ND71 665 aaPredicted RBP15.99■□□□□ 0.15
HDAC6-220ENST00000477528 AZI2Q9H6S1 392 aa15.99■□□□□ 0.15
HDAC6-220ENST00000477528 MRC1P22897 1456 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 EZRP15311 586 aaKnown RBP15.98■□□□□ 0.15
HDAC6-220ENST00000477528 FXR1P51114 621 aaKnown RBP eCLIP15.98■□□□□ 0.15
HDAC6-220ENST00000477528 CTTNQ14247 550 aaKnown RBP15.98■□□□□ 0.15
HDAC6-220ENST00000477528 PKN1Q16512 942 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 CEP128Q6ZU80 1094 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 C10orf67Q8IYJ2 551 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 PPM1KQ8N3J5 372 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 MAIP1Q8WWC4 291 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 KRT12Q99456 494 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 ZMYND10O75800 440 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 RTKN2Q8IZC4 609 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 FERMT1Q9BQL6 677 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 PARP2Q9UGN5 583 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.98■□□□□ 0.15
HDAC6-220ENST00000477528 ESYT2A0FGR8 921 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 NEBLO76041 1014 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 ATP5DP30049 168 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 CXCR5P32302 372 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 DEPTORQ8TB45 409 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 CCDC127Q96BQ5 260 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 MYO3BQ8WXR4 1341 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 NOP56O00567 594 aaKnown RBP15.98■□□□□ 0.15
HDAC6-220ENST00000477528 CASP8Q14790 479 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 NAALADL2Q58DX5 795 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 SFR1Q86XK3 245 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 ADAMTS1Q9UHI8 967 aa15.98■□□□□ 0.15
HDAC6-220ENST00000477528 CTNNA1P35221 906 aaKnown RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms