RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 SNX29Q8TEQ0 813 aa6.72□□□□□ -1.33
HERC4-209ENST00000473533 VTI1AQ96AJ9 217 aa6.72□□□□□ -1.33
HERC4-209ENST00000473533 LSM14BQ9BX40 385 aaKnown RBP6.72□□□□□ -1.33
HERC4-209ENST00000473533 NSRP1Q9H0G5 558 aaKnown RBP6.72□□□□□ -1.33
HERC4-209ENST00000473533 TNRC6CQ9HCJ0 1690 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 PP2D1A8MPX8 630 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 SART1O43290 800 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 PPP1R12BO60237 982 aaPredicted RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 GHRP10912 638 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 FCER1AP12319 257 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 EZRP15311 586 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 HSPA6P17066 643 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 RPL13P26373 211 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 USP11P51784 963 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 GSCP56915 257 aaPredicted RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 SLC7A5Q01650 507 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 LMNB2Q03252 620 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 KIAA0753Q2KHM9 967 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 LRRC55Q6ZSA7 311 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 CACNA2D3Q8IZS8 1091 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 TSEN2Q8NCE0 465 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 MYCBPAPQ8TBZ2 947 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 RASGRP4Q8TDF6 673 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 TBCKQ8TEA7 893 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 ARL8AQ96BM9 186 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 CCDC114Q96M63 670 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 RUNDC3BQ96NL0 473 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 NLRP3Q96P20 1036 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 CCT8L2Q96SF2 557 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 KRT12Q99456 494 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 PLIN2Q99541 437 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.71□□□□□ -1.33
HERC4-209ENST00000473533 FAM129AQ9BZQ8 928 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 RASAL2Q9UJF2 1139 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 FBXL5Q9UKA1 691 aa6.71□□□□□ -1.33
HERC4-209ENST00000473533 THRAP3Q9Y2W1 955 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 UTP11Q9Y3A2 253 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 GOLGB1Q14789 3259 aaKnown RBP6.71□□□□□ -1.33
HERC4-209ENST00000473533 PITPNM2Q9BZ72 1349 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 E7EVH7 732 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 PAEPP09466 180 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 CTNNA1P35221 906 aaKnown RBP6.71□□□□□ -1.34
HERC4-209ENST00000473533 TXKP42681 527 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 SLC1A4P43007 532 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 KLK7P49862 253 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 RPS8P62241 208 aaKnown RBP6.71□□□□□ -1.34
HERC4-209ENST00000473533 RAPGEF1Q13905 1077 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 TMEM119Q4V9L6 283 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 GKAP1Q5VSY0 366 aaPredicted RBP6.71□□□□□ -1.34
HERC4-209ENST00000473533 INTS5Q6P9B9 1019 aaKnown RBP6.71□□□□□ -1.34
HERC4-209ENST00000473533 STAG2Q8N3U4 1231 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 NEDD1Q8NHV4 660 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 CENPTQ96BT3 561 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 INPP4AQ96PE3 977 aaPredicted RBP6.71□□□□□ -1.34
HERC4-209ENST00000473533 SPAG5Q96R06 1193 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 TMEM47Q9BQJ4 181 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.71□□□□□ -1.34
HERC4-209ENST00000473533 PLEKHA4Q9H4M7 779 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 SLAIN2Q9P270 581 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 PARP2Q9UGN5 583 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 STX8Q9UNK0 236 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 PLAAQ9Y263 795 aa6.71□□□□□ -1.34
HERC4-209ENST00000473533 CALUO43852 315 aaPredicted RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 MYBP10242 640 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 NF2P35240 595 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 CARSP49589 748 aaKnown RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 MRPL12P52815 198 aaKnown RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 GFPT1Q06210 699 aaPredicted RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 GRB10Q13322 594 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 SLMAPQ14BN4 828 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 FRMD5Q7Z6J6 570 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 ERMNQ8TAM6 284 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 SMCR8Q8TEV9 937 aaPredicted RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 RNPC3Q96LT9 517 aaKnown RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 SLC4A9Q96Q91 983 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 MTMR9Q96QG7 549 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 PANK4Q9NVE7 773 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 MYMKA6NI61 221 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 BUB1O43683 1085 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 NMT2O60551 498 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 KIF4AO95239 1232 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 ATP1A2P50993 1020 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 POLR2FP61218 127 aaKnown RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 PPP2R2AP63151 447 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 ITGB3BPQ13352 177 aaPredicted RBP6.7□□□□□ -1.34
HERC4-209ENST00000473533 SNCBQ16143 134 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 HYIQ5T013 277 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 HGSNATQ68CP4 663 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 BICDL1Q6ZP65 573 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 ZNF804AQ7Z570 1209 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 CCHCR1Q8TD31 782 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 HDAC7Q8WUI4 952 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 DDX12PQ92771 950 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 MTMR8Q96EF0 704 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 PLCD4Q9BRC7 762 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 TMEM59LQ9UK28 342 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 LEMD3Q9Y2U8 911 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 STRCP1A6NGW2 1772 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 ZNF233A6NK53 670 aa6.7□□□□□ -1.34
HERC4-209ENST00000473533 SNAP23O00161 211 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms