RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 GJB7Q6PEY0 223 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 CATSPER3Q86XQ3 398 aa15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 NHEJ1Q9H9Q4 299 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-211ENST00000471947 LRRC53A6NM62 1247 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 CLCN6P51797 869 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 GABPAQ06546 454 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 MTMR2Q13614 643 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 HAUS3Q68CZ6 603 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 RSBN1LQ6PCB5 846 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 NAPGQ99747 312 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 N4BP2Q86UW6 1770 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 LGALS16A8MUM7 142 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 PPP1R18Q6NYC8 613 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 LDHDQ86WU2 507 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 IRF2BP1Q8IU81 584 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 AK8Q96MA6 479 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 DUSP9Q99956 384 aaKnown RBP15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 TAOK3Q9H2K8 898 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 KBTBD4Q9NVX7 518 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 NFIBO00712 420 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 KLRC4O43908 158 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 FTCDO95954 541 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 TRIM49P0CI25 452 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 TRIM49CP0CI26 452 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 CASP5P51878 434 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 SOX10P56693 466 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 GIMAP8Q8ND71 665 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 FAM163AQ96GL9 167 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 PPP1R16BQ96T49 567 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 LACRTQ9GZZ8 138 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 ZHX2Q9Y6X8 837 aa15.18■□□□□ 0.02
CCDC88A-211ENST00000471947 EML1O00423 815 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 KRT86O43790 486 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 ARP10275 920 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 HMGCS2P54868 508 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 GRM1Q13255 1194 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 MKRN4PQ13434 485 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 DALRD3Q5D0E6 543 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 MTERF4Q7Z6M4 381 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 MICALL2Q8IY33 904 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 PIM2Q9P1W9 311 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 PLCH1Q4KWH8 1693 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 SPDYE2BA6NHP3 402 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 EXOC3O60645 756 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 SPDYE6P0CI01 402 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 SLC7A5Q01650 507 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 TTI2Q6NXR4 508 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 BICD1Q96G01 975 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 WRNIP1Q96S55 665 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 REEP2Q9BRK0 252 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 RHOBTB3O94955 611 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 GTF2F1P35269 517 aaKnown RBP eCLIP15.17■□□□□ 0.027e-11■■■■□ 23.4
CCDC88A-211ENST00000471947 CASP4P49662 377 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 SF3A3Q12874 501 aaKnown RBP eCLIP15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 NBPF12Q5TAG4 269 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 NAA35Q5VZE5 725 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 UNC13DQ70J99 1090 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 CHURC1Q8WUH1 139 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 GTPBP4Q9BZE4 634 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 SNED1Q8TER0 1413 aa15.17■□□□□ 0.02
CCDC88A-211ENST00000471947 ABCA3Q99758 1704 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 CDKAL1Q5VV42 579 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 MIER3Q7Z3K6 550 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 SUPT20HQ8NEM7 779 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 GOLGA1Q92805 767 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 DHTKD1Q96HY7 919 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 P2RX7Q99572 595 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 AHDC1Q5TGY3 1603 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 FAM237AA0A1B0GTK4 181 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 TISP43B9A030 160 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 FGFR1OPO95684 399 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 KLHL30Q0D2K2 578 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 FAM102BQ5T8I3 360 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 TRIM65Q6PJ69 517 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 FAM178BQ8IXR5 827 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 KIFC3Q9BVG8 833 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 RUSC1Q9BVN2 902 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 LAD1O00515 517 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 WNT10BO00744 389 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 MSH4O15457 936 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 MYCNP04198 464 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 SSTR3P32745 418 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 NT5DC1Q5TFE4 455 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 IFT81Q8WYA0 676 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 EIF2AK1Q9BQI3 630 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 ARFGAP3Q9NP61 516 aa15.16■□□□□ 0.02
CCDC88A-211ENST00000471947 GOLGA6L9A6NEM1 432 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 MAPK8IP2Q13387 824 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 COG2Q14746 738 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 GRIPAP1Q4V328 841 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 VWA3BQ502W6 1294 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 PARD6BQ9BYG5 372 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 ARMCX3Q9UH62 379 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 LTBP4Q8N2S1 1624 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 FANCGO15287 622 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 ATP1A1P05023 1023 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 SSR1P43307 286 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 TRIM31Q9BZY9 425 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 NT5C3AQ9H0P0 336 aa15.15■□□□□ 0.02
CCDC88A-211ENST00000471947 GPRC5CQ9NQ84 441 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms