RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 FKBP3Q00688 224 aaKnown RBP8.47□□□□□ -1.05
COL6A3-208ENST00000468792 UBXN1Q04323 297 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 BMT2Q1RMZ1 405 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 EDRF1Q3B7T1 1238 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 FAM26FQ5R3K3 315 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 NOL9Q5SY16 702 aaKnown RBP8.47□□□□□ -1.05
COL6A3-208ENST00000468792 CCDC84Q86UT8 332 aaPredicted RBP8.47□□□□□ -1.05
COL6A3-208ENST00000468792 CDAN1Q8IWY9 1227 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 KIFC2Q96AC6 838 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 RNF25Q96BH1 459 aaPredicted RBP8.47□□□□□ -1.05
COL6A3-208ENST00000468792 MAP7D2Q96T17 732 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 DNAJC7Q99615 494 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 TSG101Q99816 390 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 TTYH3Q9C0H2 523 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 AS3MTQ9HBK9 375 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 PANK4Q9NVE7 773 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 HACL1Q9UJ83 578 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 PPP1R9AQ9ULJ8 1098 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 ADAMTS5Q9UNA0 930 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 PPP2R2CQ9Y2T4 447 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 ATAD5Q96QE3 1844 aa8.47□□□□□ -1.05
COL6A3-208ENST00000468792 POTEB3A0JP26 581 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 TRIM49BA6NDI0 452 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 POTECB2RU33 542 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 STK25O00506 426 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 PITPNM1O00562 1244 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 ATP2A1O14983 1001 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 CFBP00751 764 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 CCDC175P0C221 793 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 GAP43P17677 238 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 HNRNPH3P31942 346 aaKnown RBP8.46□□□□□ -1.06
COL6A3-208ENST00000468792 CASP14P31944 242 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 INPP5BP32019 993 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 MNX1P50219 401 aaPredicted RBP8.46□□□□□ -1.06
COL6A3-208ENST00000468792 ADKP55263 362 aaKnown RBP8.46□□□□□ -1.06
COL6A3-208ENST00000468792 BACE1P56817 501 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 PPP2R3AQ06190 1150 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 COASYQ13057 564 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 TUBB2AQ13885 445 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 EPHA7Q15375 998 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 MEA1Q16626 185 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 NFIL3Q16649 462 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 MAN2A1Q16706 1144 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 HSP90AA4PQ58FG1 418 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 ARSHQ5FYA8 562 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 TRIM65Q6PJ69 517 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 POTEBQ6S5H4 581 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 CYP26C1Q6V0L0 522 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 LRRC55Q6ZSA7 311 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 EPM2AIP1Q7L775 607 aaPredicted RBP8.46□□□□□ -1.06
COL6A3-208ENST00000468792 SCYL3Q8IZE3 742 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 GPC2Q8N158 579 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 OR8K1Q8NGG5 319 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 TMEM174Q8WUU8 243 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 CLEC4DQ8WXI8 215 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 CNOT6LQ96LI5 555 aaKnown RBP8.46□□□□□ -1.06
COL6A3-208ENST00000468792 FEZ1Q99689 392 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 MXRA8Q9BRK3 442 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 TUBB2BQ9BVA1 445 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 VPS16Q9H269 839 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 SLC39A2Q9NP94 309 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 OLFML3Q9NRN5 406 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 ABHD10Q9NUJ1 306 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 TAB2Q9NYJ8 693 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 MYO1AQ9UBC5 1043 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 SEL1LQ9UBV2 794 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 MAPK8IP1Q9UQF2 711 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 BCS1LQ9Y276 419 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 MYPNQ86TC9 1320 aa8.46□□□□□ -1.06
COL6A3-208ENST00000468792 DICER1Q9UPY3 1922 aaKnown RBP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 E9PMD0 336 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 MAFGO15525 162 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 ZBED4O75132 1171 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 SLITRK3O94933 977 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 LYPLA2O95372 231 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 EGFRP00533 1210 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 CHRM1P11229 460 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 LMNB1P20700 586 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 HOXA13P31271 388 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 FXR1P51114 621 aaKnown RBP eCLIP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 PRELPP51888 382 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 SNAP25P60880 206 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 ZBED6P86452 979 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 TBC1D8BQ0IIM8 1120 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 GIT2Q14161 759 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 TKFCQ3LXA3 575 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 SUPT20HL1Q3ZLR7 823 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 VWA3BQ502W6 1294 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 MIIPQ5JXC2 388 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 FKBP15Q5T1M5 1219 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 LRCH2Q5VUJ6 765 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 PCNX4Q63HM2 1172 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 DYMQ7RTS9 669 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 GPBP1Q86WP2 473 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 CCDC170Q8IYT3 715 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF280CQ8ND82 737 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 NACC1Q96RE7 527 aa8.45□□□□□ -1.06
COL6A3-208ENST00000468792 EIF2AK1Q9BQI3 630 aaKnown RBP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 GLIS2Q9BZE0 524 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-208ENST00000468792 KCTD10Q9H3F6 313 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms