RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MFAP1P55081 439 aaKnown RBP6.46□□□□□ -1.38
HMGB1-207ENST00000468384 HDLBPQ00341 1268 aaKnown RBP6.46□□□□□ -1.38
HMGB1-207ENST00000468384 SCAPQ12770 1279 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 APOBEC3HQ6NTF7 200 aaKnown RBP6.46□□□□□ -1.38
HMGB1-207ENST00000468384 NELL1Q92832 810 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 MAML3Q96JK9 1138 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 MBIPQ9NS73 344 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 CUEDC1Q9NWM3 386 aaPredicted RBP6.46□□□□□ -1.38
HMGB1-207ENST00000468384 RABGAP1Q9Y3P9 1069 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 ANKHD1Q8IWZ3 2542 aaKnown RBP6.46□□□□□ -1.38
HMGB1-207ENST00000468384 SPTBN1Q01082 2364 aaKnown RBP6.46□□□□□ -1.38
HMGB1-207ENST00000468384 TET1Q8NFU7 2136 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 CSMD1Q96PZ7 3565 aa6.46□□□□□ -1.38
HMGB1-207ENST00000468384 LAMTOR5O43504 91 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 IQCF3P0C7M6 154 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 CYP2C9P11712 490 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 GUCA2AQ02747 115 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 CTDSPL2Q05D32 466 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 LY6DQ14210 128 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 PPP2R3CQ969Q6 453 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 TEKT1Q969V4 418 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 ZDHHC15Q96MV8 337 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 CDC5LQ99459 802 aaKnown RBP6.45□□□□□ -1.38
HMGB1-207ENST00000468384 TRIM34Q9BYJ4 488 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 TBC1D17Q9HA65 648 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 SLC5A4Q9NY91 659 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 HSPBP1Q9NZL4 362 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 IL17BQ9UHF5 180 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 MKL2Q9ULH7 1088 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 PCDHGC3Q9UN70 934 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 SIT1Q9Y3P8 196 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 GRIN2DO15399 1336 aa6.45□□□□□ -1.38
HMGB1-207ENST00000468384 ATG2AQ2TAZ0 1938 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 ATMQ13315 3056 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 B8ZZF3 427 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 WDR46O15213 610 aaKnown RBP6.44□□□□□ -1.38
HMGB1-207ENST00000468384 CSPG5O95196 566 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 FDX1P10109 184 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 GLULP15104 373 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 GCGRP47871 477 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 KCNJ4P48050 445 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 JAG1P78504 1218 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 HTRA4P83105 476 aaPredicted RBP6.44□□□□□ -1.38
HMGB1-207ENST00000468384 ITGA7Q13683 1181 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 GRIK5Q16478 980 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 LINC01559Q495D7 138 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 GNASQ5JWF2 1037 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 PRSS36Q5K4E3 855 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 LCE5AQ5TCM9 118 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 LBX2Q6XYB7 198 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 ZNF804AQ7Z570 1209 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 ADGRD2Q7Z7M1 963 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 GAS2L2Q8NHY3 880 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 CCDC86Q9H6F5 360 aaKnown RBP6.44□□□□□ -1.38
HMGB1-207ENST00000468384 SPENQ96T58 3664 aaKnown RBP6.44□□□□□ -1.38
HMGB1-207ENST00000468384 STAB1Q9NY15 2570 aa6.44□□□□□ -1.38
HMGB1-207ENST00000468384 LOC105371045A0A1W2PR82 267 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 CARNS1A5YM72 827 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 DYRK3O43781 588 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 STRNO43815 780 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 SLC28A2O43868 658 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 DUSP11O75319 330 aaKnown RBP6.43□□□□□ -1.38
HMGB1-207ENST00000468384 C8BP07358 591 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 NRIP1P48552 1158 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 PDE4CQ08493 712 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 VAC14Q08AM6 782 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 SH3PXD2AQ5TCZ1 1133 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 C15orf52Q6ZUT6 534 aaKnown RBP6.43□□□□□ -1.38
HMGB1-207ENST00000468384 PPARGC1BQ86YN6 1023 aaKnown RBP6.43□□□□□ -1.38
HMGB1-207ENST00000468384 USB1Q9BQ65 265 aaKnown RBP6.43□□□□□ -1.38
HMGB1-207ENST00000468384 ISCA1Q9BUE6 129 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 SEZ6LQ9BYH1 1024 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 ANKRD2Q9GZV1 360 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 S1PR5Q9H228 398 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 SPATA6Q9NWH7 488 aaPredicted RBP6.43□□□□□ -1.38
HMGB1-207ENST00000468384 TMOD4Q9NZQ9 345 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 HIVEP1P15822 2718 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 CELSR1Q9NYQ6 3014 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 NOTCH1P46531 2555 aa6.43□□□□□ -1.38
HMGB1-207ENST00000468384 SNAP23O00161 211 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 HSP90B1P14625 803 aaKnown RBP6.42□□□□□ -1.38
HMGB1-207ENST00000468384 USP46P62068 366 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 NFIAQ12857 509 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 MTMR2Q13614 643 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 SF3A2Q15428 464 aaKnown RBP6.42□□□□□ -1.38
HMGB1-207ENST00000468384 FOXD4L5Q5VV16 416 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-207ENST00000468384 CXCL17Q6UXB2 119 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 ZDHHC14Q8IZN3 488 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 CELF5Q8N6W0 485 aaKnown RBP6.42□□□□□ -1.38
HMGB1-207ENST00000468384 C12orf50Q8NA57 414 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-207ENST00000468384 LRRN4Q8WUT4 740 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 FOXD4L4Q8WXT5 416 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-207ENST00000468384 TESK2Q96S53 571 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 SPC25Q9HBM1 224 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 FAM184BQ9ULE4 1060 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 DUSP12Q9UNI6 340 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 USTQ9Y2C2 406 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-207ENST00000468384 DOCK1Q14185 1865 aa6.42□□□□□ -1.38
HMGB1-207ENST00000468384 ADGRG4Q8IZF6 3080 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms