RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CXCR5P32302 372 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 IL9RQ01113 521 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 CTTNQ14247 550 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 HSPH1Q92598 858 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 SLC10A4Q96EP9 437 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 RMDN2Q96LZ7 410 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PRAMEF22A3QJZ6 481 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PSAPP07602 524 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 IREB2P48200 963 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PLTPP55058 493 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 ADCK5Q3MIX3 580 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 RWDD4Q6NW29 188 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 SLC35F6Q8N357 371 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 BCL2L12Q9HB09 334 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 DBNLQ9UJU6 430 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 EIF3CLB5ME19 914 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 RBM6P78332 1123 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 C2orf54Q08AI8 447 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 TCP11X2Q5H9J9 407 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PDXDC2PQ6P474 469 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PI16Q6UXB8 463 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 EIF3CQ99613 913 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 TLK1Q9UKI8 766 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 ABCC4O15439 1325 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 WDR64B1ANS9 1081 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 LAD1O00515 517 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PRPSAP2O60256 369 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 FTCDO95954 541 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 TSPYL2Q9H2G4 693 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 RPF1Q9H9Y2 349 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 PCP11498 1178 aaKnown RBP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 BCAS4Q8TDM0 211 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 RUNDC3BQ96NL0 473 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 FTOQ9C0B1 505 aaKnown RBP eCLIP16.66■□□□□ 0.26
PTPRF-206ENST00000429895 ZWILCHQ9H900 591 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 STK17AQ9UEE5 414 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 SERPINB13Q9UIV8 391 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 SLC8A2Q9UPR5 921 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 FAN1Q9Y2M0 1017 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 A0A087WWV3 80 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 MOCS3O95396 460 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 ZSCAN26Q16670 478 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 DALRD3Q5D0E6 543 aaKnown RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 SMAP1Q8IYB5 467 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 XAB2Q9HCS7 855 aaKnown RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 MAST1Q9Y2H9 1570 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 USP17L3A6NCW0 530 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 USP17L4A6NCW7 530 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 USP17L1Q7RTZ2 530 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 DEPDC1BQ8WUY9 529 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 INTS9Q9NV88 658 aaKnown RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 NFX1Q12986 1120 aaKnown RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 ZBTB41Q5SVQ8 909 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 TMEM206Q9H813 350 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 MAGEF1Q9HAY2 307 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 HACD3Q9P035 362 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 ATP8A1Q9Y2Q0 1164 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 PCDHA5Q9Y5H7 936 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 CARMIL3Q8ND23 1372 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 ZMYM1Q5SVZ6 1142 aa16.65■□□□□ 0.26
PTPRF-206ENST00000429895 ZNF589Q86UQ0 364 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 FOXP1Q9H334 677 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 SRP68Q9UHB9 627 aaKnown RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 CDC37Q16543 378 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-206ENST00000429895 ECEL1O95672 775 aa16.64■□□□□ 0.26
PTPRF-206ENST00000429895 SLCO1A2P46721 670 aa16.64■□□□□ 0.26
PTPRF-206ENST00000429895 LIG3P49916 1009 aa16.64■□□□□ 0.26
PTPRF-206ENST00000429895 APOA5Q6Q788 366 aa16.64■□□□□ 0.26
PTPRF-206ENST00000429895 TMTC3Q6ZXV5 915 aa16.64■□□□□ 0.26
PTPRF-206ENST00000429895 KRT27Q7Z3Y8 459 aa16.64■□□□□ 0.26
PTPRF-206ENST00000429895 EPB41L5Q9HCM4 733 aa16.64■□□□□ 0.26
PTPRF-206ENST00000429895 ATP10DQ9P241 1426 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 ANGPTL8Q6UXH0 198 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 NUDCD1Q96RS6 583 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 TPX2Q9ULW0 747 aaKnown RBP16.64■□□□□ 0.25
PTPRF-206ENST00000429895 WDR91A4D1P6 747 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 EVI5O60447 810 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 PPFIA2O75334 1257 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 ZNF341Q9BYN7 854 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 PDE11AQ9HCR9 933 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 DAAM1Q9Y4D1 1078 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 LRRD1A4D1F6 860 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 PMLP29590 882 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 OR6B3Q8NGW1 331 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 MSTO1Q9BUK6 570 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 LSG1Q9H089 658 aaKnown RBP16.64■□□□□ 0.25
PTPRF-206ENST00000429895 KRT82Q9NSB4 513 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 ORC6Q9Y5N6 252 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 KIF24Q5T7B8 1368 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.64■□□□□ 0.25
PTPRF-206ENST00000429895 CIAO1O76071 339 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 GABPB1Q06547 395 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-206ENST00000429895 RSBN1LQ6PCB5 846 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-206ENST00000429895 C1orf228Q6PIY5 440 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 FAM8A1Q9UBU6 413 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 ABCC12Q96J65 1359 aa16.64■□□□□ 0.25
PTPRF-206ENST00000429895 HABP4Q5JVS0 413 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms