RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SMARCA1P28370 1054 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 PLA2G4AP47712 749 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 RASSF7Q02833 373 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 COASYQ13057 564 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 RAPGEF1Q13905 1077 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 SLC15A2Q16348 729 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.28□□□□□ -0.92
CD44-208ENST00000428726 WNK4Q96J92 1243 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 MTMR9Q96QG7 549 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 CDK5RAP2Q96SN8 1893 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 PHLPP2Q6ZVD8 1323 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 LRRC53A6NM62 1247 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 AKR1B10O60218 316 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 ASPRV1Q53RT3 343 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 NSMFQ6X4W1 530 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 PODNQ7Z5L7 613 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 ADAT2Q7Z6V5 191 aaKnown RBP9.28□□□□□ -0.92
CD44-208ENST00000428726 PHLDB2Q86SQ0 1253 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 SFR1Q86XK3 245 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 ZSWIM2Q8NEG5 633 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 CAGE1Q8TC20 777 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 RIN2Q8WYP3 895 aaPredicted RBP9.28□□□□□ -0.92
CD44-208ENST00000428726 ZKSCAN4Q969J2 545 aaPredicted RBP9.28□□□□□ -0.92
CD44-208ENST00000428726 MS4A14Q96JA4 679 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 PNKPQ96T60 521 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 ZNF341Q9BYN7 854 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 L2HGDHQ9H9P8 463 aa9.28□□□□□ -0.92
CD44-208ENST00000428726 NHEJ1Q9H9Q4 299 aaPredicted RBP9.28□□□□□ -0.92
CD44-208ENST00000428726 RAVER2Q9HCJ3 691 aaKnown RBP9.28□□□□□ -0.92
CD44-208ENST00000428726 SEPT11Q9NVA2 429 aaKnown RBP9.28□□□□□ -0.92
CD44-208ENST00000428726 ZNF263O14978 683 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 GCNT3O95395 438 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 ARP10275 920 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 EIF2AK2P19525 551 aaKnown RBP9.27□□□□□ -0.93
CD44-208ENST00000428726 HMGB2P26583 209 aaKnown RBP9.27□□□□□ -0.93
CD44-208ENST00000428726 INPP5BP32019 993 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 SSTR3P32745 418 aaPredicted RBP9.27□□□□□ -0.93
CD44-208ENST00000428726 EIF4A3P38919 411 aaKnown RBP9.27□□□□□ -0.93
CD44-208ENST00000428726 CYP2J2P51589 502 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 HERVK_113P62684 666 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 OR8K1Q8NGG5 319 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 RAD54LQ92698 747 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 RUSC1Q9BVN2 902 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 PACSIN1Q9BY11 444 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 H7C1D1 291 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 NFIBO00712 420 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 RHOBTB3O94955 611 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 SLC9A1P19634 815 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 CCNE1P24864 410 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 EPS15P42566 896 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 HNRNPH2P55795 449 aaKnown RBP9.27□□□□□ -0.93
CD44-208ENST00000428726 SPAG1Q07617 926 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 C2orf54Q08AI8 447 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 SF3A3Q12874 501 aaKnown RBP eCLIP9.27□□□□□ -0.93
CD44-208ENST00000428726 MIIPQ5JXC2 388 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 FAM26FQ5R3K3 315 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 FAM182AQ5T1J6 154 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 FAM133AQ8N9E0 248 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 IL31RAQ8NI17 732 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 CCDC42Q96M95 316 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 KIFC3Q9BVG8 833 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 CCSER1Q9C0I3 900 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 ACP6Q9NPH0 428 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 SALL4Q9UJQ4 1053 aa9.27□□□□□ -0.93
CD44-208ENST00000428726 DDX60LQ5H9U9 1706 aaKnown RBP9.27□□□□□ -0.93
CD44-208ENST00000428726 KLRG2A4D1S0 409 aaPredicted RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 OPLAHO14841 1288 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 MYCNP04198 464 aaPredicted RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 MYL1P05976 194 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 PBX1P40424 430 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 PRPHP41219 470 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 SEMA3FQ13275 785 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 SYDE2Q5VT97 1194 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 CNGA4Q8IV77 575 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 CCDC47Q96A33 483 aaKnown RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 DYDC2Q96IM9 177 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 ZDHHC15Q96MV8 337 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 PANX2Q96RD6 677 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 MMS19Q96T76 1030 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 LSM14BQ9BX40 385 aaKnown RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 NDST4Q9H3R1 872 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 RIC8AQ9NPQ8 531 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 WRAP73Q9P2S5 460 aaPredicted RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 LIMA1Q9UHB6 759 aaKnown RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 LGALS16A8MUM7 142 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 MSH4O15457 936 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 FTCDO95954 541 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 OAS2P29728 719 aaKnown RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 ARHGAP25P42331 645 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 TNNT3P45378 269 aaPredicted RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 LMAN1P49257 510 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 CHMP4BP1P59074 171 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 ADAM9Q13443 819 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 DNAJC21Q5F1R6 531 aaKnown RBP9.26□□□□□ -0.93
CD44-208ENST00000428726 ARSHQ5FYA8 562 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 STRIP1Q5VSL9 837 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 EEPD1Q7L9B9 569 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 REEP2Q9BRK0 252 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 GPRC5CQ9NQ84 441 aa9.26□□□□□ -0.93
CD44-208ENST00000428726 STK32BQ9NY57 414 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms