RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 POTEB3A0JP26 581 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 F11P03951 625 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CYP19A1P11511 503 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CPB1P15086 417 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 BRD2P25440 801 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CASP14P31944 242 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CBX2Q14781 532 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 FAM110CQ1W6H9 321 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 POTEBQ6S5H4 581 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 TPRG1Q6ZUI0 275 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 CLUAP1Q96AJ1 413 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 MTG1Q9BT17 334 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 AMNQ9BXJ7 453 aa3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 SRPRBQ9Y5M8 271 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 ZCCHC11Q5TAX3 1644 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-205ENST00000426576 TONSLQ96HA7 1378 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ABHD14A-ACY1A0A1B0GW23 586 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MYMKA6NI61 221 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 M0QYT0 321 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF197O14709 1029 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MEIS2O14770 477 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TRAPPC3O43617 180 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ERLIN2O94905 339 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 FSBPO95073 299 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CYP7A1P22680 504 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ADSSP30520 456 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 KIAA2012Q0VF49 1180 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 SH3PXD2AQ5TCZ1 1133 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 STPG1Q5TH74 334 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TAS1R3Q7RTX0 852 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 DDX53Q86TM3 631 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF280CQ8ND82 737 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 KIFC2Q96AC6 838 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MS4A3Q96HJ5 214 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ZBTB1Q9Y2K1 713 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3DA0A087WVF3 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3IA0A087WXS9 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3EA0A087X179 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3KA0A087X1G2 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 GPR75-ASB3A0A0A6YYF3 556 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3FA6NER0 549 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TTLL13PA6NNM8 815 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3LB9A6J9 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 GRM8O00222 908 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 HNRNPRO43390 633 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3HP0C7X1 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 RFC2P35250 354 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 IL6STP40189 918 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TDO2P48775 406 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MYL7Q01449 175 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ENOX2Q16206 610 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3GQ6DHY5 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3CQ6IPX1 549 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 FAM178BQ8IXR5 827 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 EXOC8Q8IYI6 725 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TBC1D3Q8IZP1 549 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TMCO5AQ8N6Q1 288 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 AGBL1Q96MI9 1066 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CRAMP1Q96RY5 1269 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ADPGKQ9BRR6 497 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 EFHD1Q9BUP0 239 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MRPL17Q9NRX2 175 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 RALYQ9UKM9 306 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ASB3Q9Y575 518 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 HCFC2Q9Y5Z7 792 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 PRSS44E7EML9 344 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 KIAA0513O60268 411 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF862O60290 1169 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TADA2AO75478 443 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ITGBL1O95965 494 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 RPLP2P05387 115 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 RB1P06400 928 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 DCNP07585 359 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CNR2P34972 360 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 NLRP5P59047 1200 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MRPS9P82933 396 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TCEAL5Q5H9L2 206 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 BHLHB9Q6PI77 547 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CLEC4GQ6UXB4 293 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MCM10Q7L590 875 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 PARP9Q8IXQ6 854 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF248Q8NDW4 579 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 IP6K1Q92551 441 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 MS4A4AQ96JQ5 239 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 NGRNQ9NPE2 291 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 STX8Q9UNK0 236 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 SALL2Q9Y467 1007 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ATP6V0A2Q9Y487 856 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 SBNO1A3KN83 1393 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 RAPGEF6Q8TEU7 1601 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 BTBD19C9JJ37 291 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 BNIP3LO60238 219 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CER1O95813 267 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 GLUD1P00367 558 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 ATXN1P54253 815 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 FAAP100Q0VG06 881 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 GIT2Q14161 759 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CARTPTQ16568 116 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms