RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CCDC73Q6ZRK6 1079 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 MIER3Q7Z3K6 550 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 CTU1Q7Z7A3 348 aaKnown RBP11.37□□□□□ -0.59
CD44-207ENST00000425428 SMAP1Q8IYB5 467 aaPredicted RBP11.37□□□□□ -0.59
CD44-207ENST00000425428 CYP2W1Q8TAV3 490 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 ZFP91Q96JP5 570 aaPredicted RBP11.37□□□□□ -0.59
CD44-207ENST00000425428 KCNMB3Q9NPA1 279 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 SLC9A2Q9UBY0 812 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 MYH9P35579 1960 aaKnown RBP11.37□□□□□ -0.59
CD44-207ENST00000425428 ZSWIM8A7E2V4 1837 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 WDR64B1ANS9 1081 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 DDX39AO00148 427 aaKnown RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 FOXN1O15353 648 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 MSCO60682 206 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 PRPF40AO75400 957 aaKnown RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 SNAI1O95863 264 aaPredicted RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 HSPA8P11142 646 aaKnown RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 FXR2P51116 673 aaKnown RBP eCLIP11.36□□□□□ -0.59
CD44-207ENST00000425428 LBX1P52954 281 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 UBE2HP62256 183 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 PTPAQ15257 358 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 CCL14Q16627 93 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 CCDC144BQ3MJ40 725 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 TPRNQ4KMQ1 711 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 NCAPH2Q6IBW4 605 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 ZNF746Q6NUN9 644 aaPredicted RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 MIS18BP1Q6P0N0 1132 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 ZNF579Q8NAF0 562 aaKnown RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 RDM1Q8NG50 284 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 ETNPPLQ8TBG4 499 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 SLC5A5Q92911 643 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 CCDC43Q96MW1 224 aaKnown RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 MTMR9Q96QG7 549 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 FTOQ9C0B1 505 aaKnown RBP eCLIP11.36□□□□□ -0.59
CD44-207ENST00000425428 PTPN22Q9Y2R2 807 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 KDM3AQ9Y4C1 1321 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 ASTN1O14525 1302 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 SLC26A4O43511 780 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 CHMP2AO43633 222 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 ZEB2O60315 1214 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 GGPS1O95749 300 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 PSAPP07602 524 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 RARBP10826 455 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 FAM160B1Q5W0V3 765 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 CYFIP1Q7L576 1253 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 OR6J1Q8NGC5 347 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 NEK9Q8TD19 979 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 TRIB2Q92519 343 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 FGD4Q96M96 766 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 NT5C3AQ9H0P0 336 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 TMEM60Q9H2L4 133 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 AZI2Q9H6S1 392 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 GDPD2Q9HCC8 539 aa11.36□□□□□ -0.59
CD44-207ENST00000425428 HMX1Q9NP08 348 aaPredicted RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 HOOK1Q9UJC3 728 aaKnown RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 DDX41Q9UJV9 622 aaKnown RBP11.36□□□□□ -0.59
CD44-207ENST00000425428 LRRC37A2A6NM11 1700 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 RBM47A0AV96 593 aaKnown RBP11.35□□□□□ -0.59
CD44-207ENST00000425428 BACH1O14867 736 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 PRKAR2AP13861 404 aaKnown RBP11.35□□□□□ -0.59
CD44-207ENST00000425428 ELNP15502 786 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 PPP2R5CQ13362 524 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 LY6KQ17RY6 165 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 DUSP28Q4G0W2 176 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 METTL7BQ6UX53 244 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 TMEM87AQ8NBN3 555 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 LENG9Q96B70 501 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 SPATA33Q96N06 139 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 FLRT1Q9NZU1 646 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 PCDHA7Q9UN72 937 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 Q9Y3F1 56 aa11.35□□□□□ -0.59
CD44-207ENST00000425428 LOXHD1Q8IVV2 1947 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 A0A1W2PQ27 194 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 A0A1W2PQ64 194 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 A0A1W2PQD8 194 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 SEPT4O43236 478 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 MBD3O95983 291 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 UBA1P22314 1058 aaKnown RBP11.34□□□□□ -0.59
CD44-207ENST00000425428 CCT6AP40227 531 aaKnown RBP11.34□□□□□ -0.59
CD44-207ENST00000425428 ADCYAP1R1P41586 468 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 CPT1AP50416 773 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 SP4Q02446 784 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 ZRSR1Q15695 479 aaKnown RBP11.34□□□□□ -0.59
CD44-207ENST00000425428 CELF3Q5SZQ8 465 aaKnown RBP11.34□□□□□ -0.59
CD44-207ENST00000425428 TAPT1Q6NXT6 567 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 FBXO46Q6PJ61 603 aaPredicted RBP11.34□□□□□ -0.59
CD44-207ENST00000425428 KCTD17Q8N5Z5 321 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 C4orf32Q8N8J7 132 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 SNX29Q8TEQ0 813 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 SEPT1Q8WYJ6 367 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 MRPS27Q92552 414 aaKnown RBP11.34□□□□□ -0.59
CD44-207ENST00000425428 HAS1Q92839 578 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 ATP6V0A1Q93050 837 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 UIMC1Q96RL1 719 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 CSRNP2Q9H175 543 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 RNF39Q9H2S5 420 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 DISC1Q9NRI5 854 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 FBXO2Q9UK22 296 aaPredicted RBP11.34□□□□□ -0.59
CD44-207ENST00000425428 PCDHA10Q9Y5I2 948 aa11.34□□□□□ -0.59
CD44-207ENST00000425428 PTCH2Q9Y6C5 1203 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms