RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 LRRC63Q05C16 580 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 PTPROQ16827 1216 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 FAM98CQ17RN3 349 aaKnown RBP23.38■■□□□ 1.33
USP48-205ENST00000421625 KIAA0753Q2KHM9 967 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 GOLPH3Q9H4A6 298 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 GGA2Q9UJY4 613 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 NFS1Q9Y697 457 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 GNAQP50148 359 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 PLCB4Q15147 1175 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 CCDC121Q6ZUS5 278 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 NEK8Q86SG6 692 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 EDEM3Q9BZQ6 932 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 ISCUQ9H1K1 167 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 SLC12A6Q9UHW9 1150 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 ATP6V0A2Q9Y487 856 aa23.38■■□□□ 1.33
USP48-205ENST00000421625 RDXP35241 583 aaKnown RBP23.37■■□□□ 1.33
USP48-205ENST00000421625 KRT25Q7Z3Z0 450 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 LARP4BQ92615 738 aaKnown RBP23.37■■□□□ 1.33
USP48-205ENST00000421625 CCDC114Q96M63 670 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 OSBPL7Q9BZF2 842 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 ZMYND12Q9H0C1 365 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 NEUROG2Q9H2A3 272 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 BCCIPQ9P287 314 aaKnown RBP eCLIP23.37■■□□□ 1.33
USP48-205ENST00000421625 KCNK3O14649 394 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 ZNF844Q08AG5 666 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 TBCKQ8TEA7 893 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 ADAMTS1Q9UHI8 967 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 TMEM59LQ9UK28 342 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 SCN7AQ01118 1682 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 PVALEFA0A1B0GWK0 134 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 GMNCA6NCL1 334 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 KCNQ4P56696 695 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 SLC18A3Q16572 532 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 EP400NLQ6ZTU2 488 aa23.37■■□□□ 1.33
USP48-205ENST00000421625 SMCO2A6NFE2 343 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 DNM1LO00429 736 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 CAMTA2O94983 1202 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 CHRM1P11229 460 aaPredicted RBP23.36■■□□□ 1.33
USP48-205ENST00000421625 RAPGEF1Q13905 1077 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 LRIG3Q6UXM1 1119 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 SPATA31A5Q5VU36 1347 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 SPATA31A7Q8IWB4 1347 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 SSBP05455 408 aaKnown RBP eCLIP23.36■■□□□ 1.33
USP48-205ENST00000421625 CTNNA1P35221 906 aaKnown RBP23.36■■□□□ 1.33
USP48-205ENST00000421625 PARP10Q53GL7 1025 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 INTS5Q6P9B9 1019 aaKnown RBP23.36■■□□□ 1.33
USP48-205ENST00000421625 ARFGAP2Q8N6H7 521 aa23.36■■□□□ 1.33
USP48-205ENST00000421625 CNOT8Q9UFF9 292 aaKnown RBP23.36■■□□□ 1.33
USP48-205ENST00000421625 SRRM3A6NNA2 597 aaPredicted RBP23.35■■□□□ 1.33
USP48-205ENST00000421625 KCNK18Q7Z418 384 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 DNAAF5Q86Y56 855 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 FAM133AQ8N9E0 248 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 NUDT12Q9BQG2 462 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 STX8Q9UNK0 236 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 TRAPPC3O43617 180 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 PDHBP11177 359 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 FLT3P36888 993 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 PREPLQ4J6C6 727 aaPredicted RBP23.35■■□□□ 1.33
USP48-205ENST00000421625 SLC44A5Q8NCS7 719 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 DDX12PQ92771 950 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 NGLY1Q96IV0 654 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 TSG101Q99816 390 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 AP1M1Q9BXS5 423 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 LUC7LQ9NQ29 371 aaKnown RBP23.35■■□□□ 1.33
USP48-205ENST00000421625 TMEM260Q9NX78 707 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 BIN2Q9UBW5 565 aaPredicted RBP23.35■■□□□ 1.33
USP48-205ENST00000421625 MCM8Q9UJA3 840 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 MINPP1Q9UNW1 487 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 COL4A3BPQ9Y5P4 624 aa23.35■■□□□ 1.33
USP48-205ENST00000421625 PALM3A6NDB9 673 aaPredicted RBP23.34■■□□□ 1.33
USP48-205ENST00000421625 ANKS1AQ92625 1134 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 TAF4BQ92750 862 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 CDK5RAP3Q96JB5 506 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 TFCP2L1Q9NZI6 479 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 GOLGA6L7A0A1B0GV03 622 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 POTEMA6NI47 508 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 KLRF2D3W0D1 207 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 TRAF5O00463 557 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 DRP2Q13474 957 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 GIMAP7Q8NHV1 300 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 SYN2Q92777 582 aaPredicted RBP23.34■■□□□ 1.33
USP48-205ENST00000421625 MKNK2Q9HBH9 465 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 HAUS2Q9NVX0 235 aa23.34■■□□□ 1.33
USP48-205ENST00000421625 DCDC2CA8MYV0 355 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 TMEM47Q9BQJ4 181 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 STK17AQ9UEE5 414 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 LEMD3Q9Y2U8 911 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 MYCNP04198 464 aaPredicted RBP23.33■■□□□ 1.33
USP48-205ENST00000421625 TSPY3P0CV98 308 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 TSPY8P0CW00 308 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 CDR1P51861 262 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 KLHL30Q0D2K2 578 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 BYSLQ13895 437 aaKnown RBP23.33■■□□□ 1.33
USP48-205ENST00000421625 RPS6KA1Q15418 735 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 ODF2Q5BJF6 829 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 C12orf60Q5U649 245 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 FBXL5Q9UKA1 691 aa23.33■■□□□ 1.33
USP48-205ENST00000421625 CEP104O60308 925 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 ATP2C2O75185 946 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 PSEN1P49768 467 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms