RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 TRIM75PA6NK02 468 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 GOLGA8AA7E2F4 631 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 GOLGA8BA8MQT2 603 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 DDX3YO15523 660 aaKnown RBP6.12□□□□□ -1.43
VPS13A-207ENST00000419472 AOC2O75106 756 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ZBED1O96006 694 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 SCG5P05408 212 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 DNM2P50570 870 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 KRT85P78386 507 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ATAT1Q5SQI0 421 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 GPR155Q7Z3F1 870 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 PTRH1Q86Y79 214 aaKnown RBP6.12□□□□□ -1.43
VPS13A-207ENST00000419472 CCDC103Q8IW40 242 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 PPIL6Q8IXY8 311 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 IL22RA1Q8N6P7 574 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ACRBPQ8NEB7 543 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 KIAA1191Q96A73 305 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ERP27Q96DN0 273 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 PCDHA11Q9Y5I1 949 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ABCC1P33527 1531 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ZFYVE16Q7Z3T8 1539 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 SUPT6HQ7KZ85 1726 aaKnown RBP6.12□□□□□ -1.43
VPS13A-207ENST00000419472 C2CD2LO14523 706 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 KRT37O76014 449 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 OSMP13725 252 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 PRIM2P49643 509 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 POU5F1Q01860 360 aaKnown RBP6.12□□□□□ -1.43
VPS13A-207ENST00000419472 HYIQ5T013 277 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 DRC7Q8IY82 874 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 MYCT1Q8N699 235 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 LMBR1Q8WVP7 490 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 TMEM169Q96HH4 297 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 WDR12Q9GZL7 423 aaKnown RBP6.12□□□□□ -1.43
VPS13A-207ENST00000419472 FBXL21Q9UKT6 434 aa6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ATXN7L1Q9ULK2 861 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-207ENST00000419472 ZNF518AQ6AHZ1 1483 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 ARHGAP5Q13017 1502 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 TIAM1Q13009 1591 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 A6NCN8 305 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 PYGLP06737 847 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 THBDP07204 575 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 ABCB4P21439 1286 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 BAG6P46379 1132 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 DDX10Q13206 875 aaKnown RBP6.11□□□□□ -1.43
VPS13A-207ENST00000419472 PCSK7Q16549 785 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 OVCH1Q7RTY7 1134 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 CACTIN-AS1Q8N1I8 211 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 CRACR2BQ8N4Y2 399 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-207ENST00000419472 CAMKK1Q8N5S9 505 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 CELF4Q9BZC1 486 aaKnown RBP6.11□□□□□ -1.43
VPS13A-207ENST00000419472 RABGAP1Q9Y3P9 1069 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 ADAMTSL3P82987 1691 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 LOC100289279A0A1B0GTE1 492 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 SLC9A1P19634 815 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 ERVK-24P63145 666 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 PTSQ03393 145 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 SEMA5AQ13591 1074 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 PPP4R3AQ6IN85 833 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 NSUN6Q8TEA1 469 aaKnown RBP6.11□□□□□ -1.43
VPS13A-207ENST00000419472 HPS3Q969F9 1004 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 VWCEQ96DN2 955 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 ZNF837Q96EG3 531 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-207ENST00000419472 GPRC5BQ9NZH0 403 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 BCORL1Q5H9F3 1711 aa6.11□□□□□ -1.43
VPS13A-207ENST00000419472 STXBP3O00186 592 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 FSCN2O14926 492 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 NEFMP07197 916 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 C5AR1P21730 350 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 ADH7P40394 386 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 TERF1P54274 439 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 SCARF1Q14162 830 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 ZNF468Q5VIY5 522 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-207ENST00000419472 FSTL4Q6MZW2 842 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 PGBD4Q96DM1 585 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 SMC4Q9NTJ3 1288 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 CCDC66A2RUB6 948 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 M0R3H8 397 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 MEIS1O00470 390 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 FANCGO15287 622 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 PIP4K2BP78356 416 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 OCRLQ01968 901 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 FAPQ12884 760 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 TERF2Q15554 542 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 FAM182BQ5T319 152 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 DUSP27Q5VZP5 1158 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 SWSAP1Q6NVH7 229 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 MZT2AQ6P582 158 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 C16orf54Q6UWD8 224 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 FRS2Q8WU20 508 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 RIPOR3Q96MK2 946 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 B3GNT5Q9BYG0 378 aa6.1□□□□□ -1.43
VPS13A-207ENST00000419472 KCNK3O14649 394 aa6.09□□□□□ -1.43
VPS13A-207ENST00000419472 TMPRSS2O15393 492 aa6.09□□□□□ -1.43
VPS13A-207ENST00000419472 TBC1D8O95759 1140 aa6.09□□□□□ -1.43
VPS13A-207ENST00000419472 POU2F2P09086 479 aa6.09□□□□□ -1.43
VPS13A-207ENST00000419472 PIK3CBP42338 1070 aa6.09□□□□□ -1.43
VPS13A-207ENST00000419472 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.09□□□□□ -1.436e-6■□□□□ 8.6
VPS13A-207ENST00000419472 LHX8Q68G74 356 aa6.09□□□□□ -1.43
VPS13A-207ENST00000419472 SRGAP1Q7Z6B7 1085 aa6.09□□□□□ -1.43
VPS13A-207ENST00000419472 OR2C3Q8N628 320 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms