RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CAGE1Q8TC20 777 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 CRYGNQ8WXF5 182 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 INPP4AQ96PE3 977 aaPredicted RBP10.91□□□□□ -0.66
SS18-203ENST00000415083 GDF3Q9NR23 364 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 NENFQ9UMX5 172 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 MED24O75448 989 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 PALMO75781 387 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 FTCDO95954 541 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 ZNF543Q08ER8 600 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 TSR1Q2NL82 804 aaKnown RBP10.91□□□□□ -0.66
SS18-203ENST00000415083 MFSD14BQ5SR56 506 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 ZNF804AQ7Z570 1209 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 SH2D3CQ8N5H7 860 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 RBM46Q8TBY0 533 aaKnown RBP10.91□□□□□ -0.66
SS18-203ENST00000415083 ZIM3Q96PE6 472 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 TSGA10Q9BZW7 698 aa10.91□□□□□ -0.66
SS18-203ENST00000415083 CCNL1Q9UK58 526 aaPredicted RBP10.91□□□□□ -0.66
SS18-203ENST00000415083 POTEB3A0JP26 581 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 FRMD3A2A2Y4 597 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 GRID2IPA4D2P6 1211 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 POTECB2RU33 542 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 TNFRSF8P28908 595 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 MARSP56192 900 aaKnown RBP10.9□□□□□ -0.66
SS18-203ENST00000415083 CORO7P57737 925 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 ORC2Q13416 577 aaPredicted RBP10.9□□□□□ -0.66
SS18-203ENST00000415083 POTEBQ6S5H4 581 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 NELFCDQ8IXH7 590 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 TBC1D16Q8TBP0 767 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 CERKQ8TCT0 537 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 CAVIN3Q969G5 261 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 TMEM59LQ9UK28 342 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 RTCBQ9Y3I0 505 aaKnown RBP10.9□□□□□ -0.66
SS18-203ENST00000415083 HYOU1Q9Y4L1 999 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 SSU72P8A0A1W2PR75 194 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L15C9J2P7 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L13C9JLJ4 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L11C9JVI0 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L18D6R9N7 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L22D6RA61 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L17D6RBQ6 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L19D6RCP7 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L20D6RJB6 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 TACC1O75410 805 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 CYP11B2P19099 503 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 RFC4P35249 363 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 TNNI2P48788 182 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 AMPD3Q01432 767 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L24Q0WX57 530 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 MEI1Q5TIA1 1274 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 USP17L6PQ6QN14 398 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 KCTD1Q719H9 257 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 IRF2BP2Q7Z5L9 587 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 SIAH1Q8IUQ4 282 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 IQCKQ8N0W5 287 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 CASKIN2Q8WXE0 1202 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 STIM2Q9P246 746 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 SEC63Q9UGP8 760 aaKnown RBP10.9□□□□□ -0.66
SS18-203ENST00000415083 COL4A3BPQ9Y5P4 624 aa10.9□□□□□ -0.66
SS18-203ENST00000415083 GOLGA6BA6NDN3 693 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 PPFIA4O75335 1185 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 KRT14P02533 472 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 SLC12A3P55017 1021 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 PICALMQ13492 652 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 SPA17Q15506 151 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 NAB2Q15742 525 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 LSM14BQ9BX40 385 aaKnown RBP10.9□□□□□ -0.67
SS18-203ENST00000415083 KCNMB3Q9NPA1 279 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 DDX25Q9UHL0 483 aaKnown RBP10.9□□□□□ -0.67
SS18-203ENST00000415083 PCDHGC5Q9Y5F6 944 aa10.9□□□□□ -0.67
SS18-203ENST00000415083 AKR1B10O60218 316 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 POLR2FP61218 127 aaKnown RBP10.89□□□□□ -0.67
SS18-203ENST00000415083 FOXR2Q6PJQ5 311 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 AMOTL1Q8IY63 956 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 LENG9Q96B70 501 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 PANK4Q9NVE7 773 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 CEP72Q9P209 647 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 SLC9A1P19634 815 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 HSP90B2PQ58FF3 399 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 SOGA3Q5TF21 947 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 SLC30A10Q6XR72 485 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 LEKR1Q6ZMV7 388 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 FAM196AQ6ZSG2 479 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 ZNF571Q7Z3V5 609 aaPredicted RBP10.89□□□□□ -0.67
SS18-203ENST00000415083 MYOCDQ8IZQ8 938 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 TBC1D5Q92609 795 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 KAT2BQ92831 832 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 NEUROG2Q9H2A3 272 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 RASSF4Q9H2L5 321 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 SIX2Q9NPC8 291 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 C10orf71Q711Q0 1435 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 SCN9AQ15858 1988 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 PNMA6FA0A0J9YX94 578 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 EPB41P11171 864 aaKnown RBP10.89□□□□□ -0.67
SS18-203ENST00000415083 PPP1R2P41236 205 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 KCNA1Q09470 495 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 NFIAQ12857 509 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 NFU1Q9UMS0 254 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 KIAA1024Q9UPX6 916 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 ATP6V0A2Q9Y487 856 aa10.89□□□□□ -0.67
SS18-203ENST00000415083 UTRNP46939 3433 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms