RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ITIH6Q6UXX5 1313 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 USO1O60763 962 aaKnown RBP14.8□□□□□ -0.04
VPS54-203ENST00000409558 SFR1Q86XK3 245 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 PACSIN1Q9BY11 444 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 RIC8AQ9NPQ8 531 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 EMILIN3Q9NT22 766 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 SAMM50Q9Y512 469 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 SH3BP5LQ7L8J4 393 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 ADAT2Q7Z6V5 191 aaKnown RBP14.8□□□□□ -0.04
VPS54-203ENST00000409558 SALL4Q9UJQ4 1053 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 MYBP10242 640 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.8□□□□□ -0.04
VPS54-203ENST00000409558 FBXO11Q86XK2 927 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 TNRC6CQ9HCJ0 1690 aaKnown RBP14.8□□□□□ -0.04
VPS54-203ENST00000409558 GAKO14976 1311 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 H0YIN7 160 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 GABPAQ06546 454 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 ZC2HC1CQ53FD0 456 aaPredicted RBP14.8□□□□□ -0.04
VPS54-203ENST00000409558 FAM198AQ9UFP1 575 aa14.8□□□□□ -0.04
VPS54-203ENST00000409558 FAM86B1E9PN63 330 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 FAM86B2P0C5J1 330 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 MYBL2P10244 700 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 SLC9A1P19634 815 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 GABPB1Q06547 395 aaPredicted RBP14.79□□□□□ -0.04
VPS54-203ENST00000409558 CASP8Q14790 479 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 FAM83BQ5T0W9 1011 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 CRAMP1Q96RY5 1269 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 CHORDC1Q9UHD1 332 aaPredicted RBP14.79□□□□□ -0.04
VPS54-203ENST00000409558 A0A1B0GUL6 1792 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 LRRIQ3A6PVS8 624 aaPredicted RBP14.79□□□□□ -0.04
VPS54-203ENST00000409558 CYP2J2P51589 502 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 EHHADHQ08426 723 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 MAN2A1Q16706 1144 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 CCDC65Q8IXS2 484 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 NPR1P16066 1061 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 CASP4P49662 377 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 RRP1BQ14684 758 aaKnown RBP14.79□□□□□ -0.04
VPS54-203ENST00000409558 CATSPER3Q86XQ3 398 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 NLGN1Q8N2Q7 840 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 DNAJC7Q99615 494 aa14.79□□□□□ -0.04
VPS54-203ENST00000409558 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.79□□□□□ -0.04
VPS54-203ENST00000409558 A0A1W2PRG0 241 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 ZSCAN5CA6NGD5 496 aaPredicted RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 TACC1O75410 805 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 KLHL7Q8IXQ5 586 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 ZNF277Q9NRM2 450 aaPredicted RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 PI4KBQ9UBF8 816 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 FZD1Q9UP38 647 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 CAPN2P17655 700 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 ALDH1B1P30837 517 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 USP8P40818 1118 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 GPATCH4Q5T3I0 446 aaKnown RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 GLIS2Q9BZE0 524 aaPredicted RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 COL4A3BPQ9Y5P4 624 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 NMT1P30419 496 aaKnown RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 CENPPQ6IPU0 288 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 MYCT1Q8N699 235 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 CCDC151A5D8V7 595 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 ADRA2BP18089 450 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 FKBP3Q00688 224 aaKnown RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 KLHL30Q0D2K2 578 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 SF3A3Q12874 501 aaKnown RBP eCLIP14.78□□□□□ -0.046e-7■■■■□ 21.5
VPS54-203ENST00000409558 KIAA0753Q2KHM9 967 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 BEND6Q5SZJ8 279 aaPredicted RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 UTP14CQ5TAP6 766 aaKnown RBP14.78□□□□□ -0.04
VPS54-203ENST00000409558 SND1Q7KZF4 910 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS54-203ENST00000409558 HDXQ7Z353 690 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 CERKQ8TCT0 537 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 ADAM21Q9UKJ8 722 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 DNM3Q9UQ16 869 aa14.78□□□□□ -0.04
VPS54-203ENST00000409558 CT47A1Q5JQC4 288 aaPredicted RBP14.77□□□□□ -0.04
VPS54-203ENST00000409558 TAF3Q5VWG9 929 aa14.77□□□□□ -0.04
VPS54-203ENST00000409558 LRRC1Q9BTT6 524 aa14.77□□□□□ -0.04
VPS54-203ENST00000409558 TBCAO75347 108 aaKnown RBP14.77□□□□□ -0.05
VPS54-203ENST00000409558 GUCY2FP51841 1108 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 HNRNPH2P55795 449 aaKnown RBP14.77□□□□□ -0.05
VPS54-203ENST00000409558 GPS2Q13227 327 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 NAA35Q5VZE5 725 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 REEP2Q9BRK0 252 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 AMNQ9BXJ7 453 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 ABCB4P21439 1286 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 POLD1P28340 1107 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 MKRN4PQ13434 485 aaPredicted RBP14.77□□□□□ -0.05
VPS54-203ENST00000409558 PRPF4BQ13523 1007 aaKnown RBP14.77□□□□□ -0.05
VPS54-203ENST00000409558 WHAMMP3Q1A5X7 153 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 MTMR8Q96EF0 704 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 CUEDC2Q9H467 287 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 PCIF1Q9H4Z3 704 aa14.77□□□□□ -0.05
VPS54-203ENST00000409558 DMGDHQ9UI17 866 aaKnown RBP14.77□□□□□ -0.05
VPS54-203ENST00000409558 A0A1W2PQC6 194 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 CYP11B2P19099 503 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 ARHGAP44Q17R89 818 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 MASTLQ96GX5 879 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 TMEM39BQ9GZU3 492 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 STK17AQ9UEE5 414 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 MYH10P35580 1976 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 ROBO3Q96MS0 1386 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 TMEM150BA6NC51 233 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 EML1O00423 815 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 BMP3P12645 472 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms