RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 DCDC2Q9UHG0 476 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 PCDHA12Q9UN75 941 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 NSD3Q9BZ95 1437 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 PRDM1O75626 825 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 ZNF18P17022 549 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 MECOMQ03112 1051 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 CUL1Q13616 776 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 NOSTRINQ8IVI9 506 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 TMC2Q8TDI7 906 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 OTULINQ96BN8 352 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 ANKRD36BP1Q96IX9 119 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 PHACTR3Q96KR7 559 aa11.46□□□□□ -0.57
RTN3-206ENST00000377819 CCDC151A5D8V7 595 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 PAMP19021 973 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 GOLGA8FQ08AF8 430 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 GOLGA8DPQ0D2H9 430 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 LAMC1P11047 1609 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 NR5A1Q13285 461 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 CYP4F22Q6NT55 531 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 MMS22LQ6ZRQ5 1243 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 PDIK1LQ8N165 341 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 MAGEB5Q9BZ81 275 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 FOXP3Q9BZS1 431 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 KLC2Q9H0B6 622 aa11.46□□□□□ -0.58
RTN3-206ENST00000377819 HNRNPDLO14979 420 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 RPSAP08865 295 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 SLFN14P0C7P3 912 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 MFAP3P55082 362 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 TCP10Q12799 353 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 ADAT2Q7Z6V5 191 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 NCAPG2Q86XI2 1143 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 B4GALNT2Q8NHY0 566 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 BTBD6Q96KE9 485 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 HACD3Q9P035 362 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 KIF17Q9P2E2 1029 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 FRMPD1Q5SYB0 1578 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 KIF13AQ9H1H9 1805 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 BASP1P80723 227 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 LAMC2Q13753 1193 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 MXD4Q14582 209 aaPredicted RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 ZKSCAN8Q15776 578 aaPredicted RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 HABP4Q5JVS0 413 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 KRT78Q8N1N4 520 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 LLPHQ9BRT6 129 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 CCDC87Q9NVE4 849 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 ATP11BQ9Y2G3 1177 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.45□□□□□ -0.586e-7■■■□□ 14.6
RTN3-206ENST00000377819 ARHGEF12Q9NZN5 1544 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 SOS2Q07890 1332 aaPredicted RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 C4BPBP20851 252 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 BRD2P25440 801 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 ADCK1Q86TW2 530 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 CALN1Q9BXU9 219 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 KDM4CQ9H3R0 1056 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 FAM96AQ9H5X1 160 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 PAPOLBQ9NRJ5 636 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 ABCC5O15440 1437 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 KAT6BQ8WYB5 2073 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 FAM107AO95990 144 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 HSPA1AP0DMV8 641 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 HSPA1BP0DMV9 641 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 ALS2CLQ60I27 953 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 ANKRD44Q8N8A2 993 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 DCPSQ96C86 337 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 MRPL47Q9HD33 250 aaKnown RBP11.45□□□□□ -0.58
RTN3-206ENST00000377819 CASS4Q9NQ75 786 aa11.45□□□□□ -0.58
RTN3-206ENST00000377819 KDRP35968 1356 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 POLR2MP0CAP2 368 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 UBE3AQ05086 875 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 SLC39A6Q13433 755 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 RAPGEF5Q92565 580 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 ASIC4Q96FT7 647 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 MEIS3Q99687 375 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 AATFQ9NY61 560 aaKnown RBP eCLIP11.44□□□□□ -0.58
RTN3-206ENST00000377819 SNTNA6NMZ2 147 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 PIK3CAP42336 1068 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 MESDQ14696 234 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 FAM180AQ6UWF9 173 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 GADL1Q6ZQY3 521 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 SKAP1Q86WV1 359 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 PPP2R3CQ969Q6 453 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 TUBGCP3Q96CW5 907 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 SENP1Q9P0U3 644 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 STK17AQ9UEE5 414 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 PCDHB4Q9Y5E5 795 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 IBTKQ9P2D0 1353 aaPredicted RBP11.44□□□□□ -0.58
RTN3-206ENST00000377819 ZNF202O95125 648 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 HSPA4LO95757 839 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 SLC10A5Q5PT55 438 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 EXT2Q93063 718 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 TEKT3Q9BXF9 490 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 SYNDIG1Q9H7V2 258 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 AKT3Q9Y243 479 aa11.44□□□□□ -0.58
RTN3-206ENST00000377819 SERPINB10P48595 397 aa11.43□□□□□ -0.58
RTN3-206ENST00000377819 RUNX1T1Q06455 604 aa11.43□□□□□ -0.58
RTN3-206ENST00000377819 MTX1Q13505 466 aa11.43□□□□□ -0.58
RTN3-206ENST00000377819 DARS2Q6PI48 645 aaKnown RBP11.43□□□□□ -0.58
RTN3-206ENST00000377819 SLFN12Q8IYM2 578 aa11.43□□□□□ -0.58
RTN3-206ENST00000377819 ELMOD1Q8N336 334 aa11.43□□□□□ -0.58
RTN3-206ENST00000377819 NLRP4Q96MN2 994 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms