RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TRIP4Q15650 581 aaPredicted RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 C4orf46Q504U0 113 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ARHGEF16Q5VV41 709 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 NCAPH2Q6IBW4 605 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 RWDD4Q6NW29 188 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 FOXR2Q6PJQ5 311 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 NSMFQ6X4W1 530 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 SV2BQ7L1I2 683 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 CSGALNACT2Q8N6G5 542 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 GCC1Q96CN9 775 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 USP26Q9BXU7 913 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 CATSPERZQ9NTU4 200 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ZBTB40Q9NUA8 1239 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ALKBH4Q9NXW9 302 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 VTI1BQ9UEU0 232 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 KLHL3Q9UH77 587 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ATAD2Q6PL18 1390 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 CHEK2O96017 543 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 RPL13P26373 211 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 TMOD1P28289 359 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 GTF2E2P29084 291 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 TNNC1P63316 161 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 TCP10Q12799 353 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 LARGE2Q8N3Y3 721 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 STK32BQ9NY57 414 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 HESX1Q9UBX0 185 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ATP6V1HQ9UI12 483 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ATP8B3O60423 1300 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 OR7A10O76100 309 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 DDX5P17844 614 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 KRT72Q14CN4 511 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 SMU1Q2TAY7 513 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 TXNDC2Q86VQ3 553 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 TBC1D19Q8N5T2 526 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF614Q8N883 585 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 CEP70Q8NHQ1 597 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 FAM81AQ8TBF8 368 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF507Q8TCN5 953 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 DEPDC1BQ8WUY9 529 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 AFG1LQ8WV93 481 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 PHKBQ93100 1093 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ASIC4Q96FT7 647 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 PNMA5Q96PV4 448 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 VPS35Q96QK1 796 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 KIF2CQ99661 725 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 SNRKQ9NRH2 765 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 KCNH3Q9ULD8 1083 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 EXOC6BQ9Y2D4 811 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 E5RI56 91 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TPD52L2O43399 206 aaKnown RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 GCNT3O95395 438 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 HPGDP15428 266 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 CYP7A1P22680 504 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 UGP2Q16851 508 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM72Q6ZMU5 477 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TOGARAM2Q6ZUX3 1019 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 PPP1R16BQ96T49 567 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ZBTB18Q99592 522 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 PLEKHA4Q9H4M7 779 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 RUBCNLQ9H714 662 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TBC1D7Q9P0N9 293 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TESPA1A2RU30 521 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 HSPA6P17066 643 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ALAS2P22557 587 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 PDHA2P29803 388 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 EIF2S3LQ2VIR3 472 aaKnown RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 PIK3AP1Q6ZUJ8 805 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 CROCCP2Q86T23 111 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 FATE1Q969F0 183 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ULK4Q96C45 1275 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 AGBL1Q96MI9 1066 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 FAM161BQ96MY7 647 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 WIZO95785 1651 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 FRMD3A2A2Y4 597 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC78A2IDD5 438 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TAF4O00268 1085 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 XPOTO43592 962 aaKnown RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 PDE1BQ01064 536 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ALDH6A1Q02252 535 aaKnown RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 NUGGCQ68CJ6 796 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 CYP26C1Q6V0L0 522 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TSPAN14Q8NG11 270 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 NARS2Q96I59 477 aaKnown RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ASPSCR1Q9BZE9 553 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 SNX25Q9H3E2 840 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 DCDC2Q9UHG0 476 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF229Q9UJW7 825 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM17Q9Y577 477 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 H7C0C1 242 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 NFICP08651 508 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 GJB2P29033 226 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ATP5OP48047 213 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TLK2Q86UE8 772 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 OOSP2Q86WS3 158 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 DEPTORQ8TB45 409 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 KIFC3Q9BVG8 833 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 NDFIP2Q9NV92 336 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TLK1Q9UKI8 766 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 CROCCQ5TZA2 2017 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms