RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 A0A087WUV0 522 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-203ENST00000372407 H7C0C1 242 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 BAG2O95816 211 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 ATP5OP48047 213 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 DHX9Q08211 1270 aaKnown RBP12.41□□□□□ -0.42
PTPRF-203ENST00000372407 CASP8Q14790 479 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 PPP2R5AQ15172 486 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 EFCAB13Q8IY85 973 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 NHEJ1Q9H9Q4 299 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-203ENST00000372407 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-203ENST00000372407 MAD1L1Q9Y6D9 718 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 TCP10L2B9ZVM9 353 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 SERPINB2P05120 415 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 PTPREP23469 700 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 MAPK4P31152 587 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 LRRC63Q05C16 580 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 ARHGAP27Q6ZUM4 889 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 FAM81BQ96LP2 452 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 PIGSQ96S52 555 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 KCNQ2O43526 872 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 FTCDO95954 541 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 TMOD1P28289 359 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 SH3BGRP55822 239 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-203ENST00000372407 SNCBQ16143 134 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 FBXO38Q6PIJ6 1188 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 GSDMBQ8TAX9 411 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 PTPN22Q9Y2R2 807 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 HEG1Q9ULI3 1381 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 LRRN2O75325 713 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 PLCG1P19174 1290 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 TRIM68Q6AZZ1 485 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 FAM133AQ8N9E0 248 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 WHAMMQ8TF30 809 aa12.41□□□□□ -0.42
PTPRF-203ENST00000372407 RPS6KA4O75676 772 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 PNMA6AP0CW24 399 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-203ENST00000372407 GCKP35557 465 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 KIF11P52732 1056 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 RNASELQ05823 741 aaKnown RBP12.4□□□□□ -0.42
PTPRF-203ENST00000372407 KRT31Q15323 416 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 SGO2Q562F6 1265 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 TCP11X2Q5H9J9 407 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 ALS2CLQ60I27 953 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 DGKHQ86XP1 1220 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.4□□□□□ -0.42
PTPRF-203ENST00000372407 ZNF577Q9BSK1 485 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 ERVV-1B6SEH8 477 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 MFAP3LO75121 409 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 SERPING1P05155 500 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 DBN1Q16643 649 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 TAB3Q8N5C8 712 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-203ENST00000372407 SLC7A3Q8WY07 619 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 STRBPQ96SI9 672 aaKnown RBP12.4□□□□□ -0.42
PTPRF-203ENST00000372407 PAGR1Q9BTK6 254 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 C3P01024 1663 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 VGLL3A8MV65 326 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 MOCS3O95396 460 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 ECEL1O95672 775 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 PDE1BQ01064 536 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 RINT1Q6NUQ1 792 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 PPP1R2P3Q6NXS1 205 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 EMBQ6PCB8 327 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 ACCSQ96QU6 501 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 TMEM206Q9H813 350 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 ANKFY1Q9P2R3 1169 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 ADAMTS1Q9UHI8 967 aa12.4□□□□□ -0.42
PTPRF-203ENST00000372407 H7C1W4 665 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 CLIC2O15247 247 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 PIK3CAP42336 1068 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 CACNB1Q02641 598 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 NXNQ6DKJ4 435 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 CYP4F22Q6NT55 531 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 ALKBH5Q6P6C2 394 aaKnown RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 ARHGEF18Q6ZSZ5 1173 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 SPICE1Q8N0Z3 855 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 COA7Q96BR5 231 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 KLHL29Q96CT2 875 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 EIF3CLB5ME19 914 aaKnown RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 SART1O43290 800 aaKnown RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 BBOX1O75936 387 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 GFPT2O94808 682 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 C2orf54Q08AI8 447 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 NNTQ13423 1086 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 SLMAPQ14BN4 828 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 USP17L2Q6R6M4 530 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 TMC4Q7Z404 712 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 EIF3CQ99613 913 aaKnown RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 Q9H521 79 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 CNOT10Q9H9A5 744 aaKnown RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 PCDHB4Q9Y5E5 795 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 RPAP1Q9BWH6 1393 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 MROH1Q8NDA8 1641 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 RASGRF1Q13972 1273 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 ZKSCAN8Q15776 578 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 KMT5BQ4FZB7 885 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 NEK9Q8TD19 979 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 TCP11Q8WWU5 503 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 IFT122Q9HBG6 1241 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 MRPL47Q9HD33 250 aaKnown RBP12.39□□□□□ -0.43
PTPRF-203ENST00000372407 DISC1Q9NRI5 854 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 GCNT4Q9P109 453 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms