RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 POTEFA5A3E0 1075 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 YDJCA8MPS7 323 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 FOSP01100 380 aaPredicted RBP23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 ATP1A1P05023 1023 aaKnown RBP23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 POTEIP0CG38 1075 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 SREBF1P36956 1147 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 HERC4Q5GLZ8 1057 aaPredicted RBP23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 PAPD7Q5XG87 772 aaKnown RBP23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 CC2D2BQ6DHV5 1058 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 POTEGQ6S5H5 508 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 POTEEQ6S8J3 1075 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 PURBQ96QR8 312 aaKnown RBP23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 CSRNP1Q96S65 589 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 PNKPQ96T60 521 aa23.08■■□□□ 1.28
CCDC88B-203ENST00000359902 SPDYE3A6NKU9 549 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 FAM86B1E9PN63 330 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 OPLAHO14841 1288 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 FAM86B2P0C5J1 330 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 TAL1P17542 331 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 VAV2P52735 878 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 KCNMA1Q12791 1236 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 TERF2Q15554 542 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 KRT26Q7Z3Y9 468 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 BAP1Q92560 729 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 FUT8Q9BYC5 575 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 FRMD3A2A2Y4 597 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 RAD51AP2Q09MP3 1159 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 HAUS3Q68CZ6 603 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 CCDC155Q8N6L0 562 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 SCFD1Q8WVM8 642 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 CEP63Q96MT8 703 aa23.07■■□□□ 1.28
CCDC88B-203ENST00000359902 SPA17Q15506 151 aa23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 LONRF2Q1L5Z9 754 aa23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 RRAGAQ7L523 313 aa23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 NELFCDQ8IXH7 590 aa23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 HNRNPLLQ8WVV9 542 aaKnown RBP23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 TANGO6Q9C0B7 1094 aa23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 KCTD10Q9H3F6 313 aa23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 SAR1BQ9Y6B6 198 aa23.06■■□□□ 1.28
CCDC88B-203ENST00000359902 PITPNM2Q9BZ72 1349 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 LRRC53A6NM62 1247 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 SPATA31C1P0DKV0 1188 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 PSMC6P62333 389 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 KIF5AQ12840 1032 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 NOA1Q8NC60 698 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 UBXN6Q9BZV1 441 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 EMILIN3Q9NT22 766 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 COL2A1P02458 1487 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 LCA5LO95447 670 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 RPA1P27694 616 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 CIITAP33076 1130 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 EIF4A3P38919 411 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 CCDC40Q4G0X9 1142 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 SPICE1Q8N0Z3 855 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 FAM20AQ96MK3 541 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 EDEM3Q9BZQ6 932 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 PRR12Q9ULL5 1215 aa23.05■■□□□ 1.28
CCDC88B-203ENST00000359902 RHOXF2BP0C7M4 288 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 HOXA13P31271 388 aaPredicted RBP23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 NEK11Q8NG66 645 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 ERMNQ8TAM6 284 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 SMCR8Q8TEV9 937 aaPredicted RBP23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 RHOXF2Q9BQY4 288 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 PPIP5K2O43314 1243 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 KRT18P05783 430 aaKnown RBP23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 KIF11P52732 1056 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 MARSP56192 900 aaKnown RBP23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 TSGA10Q9BZW7 698 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 SYNPO2Q9UMS6 1093 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 PCDHA13Q9Y5I0 950 aa23.04■■□□□ 1.28
CCDC88B-203ENST00000359902 MEIS1O00470 390 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 MSH4O15457 936 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 SRGAP2O75044 1071 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 KIF20AO95235 890 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 GNA14O95837 355 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 PDXDC1Q6P996 788 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 SYT2Q8N9I0 419 aaPredicted RBP23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 SUPT20HQ8NEM7 779 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 HERC5Q9UII4 1024 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 DNM3Q9UQ16 869 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 MACROD2A1Z1Q3 448 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 ECE1P42892 770 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 GIT2Q14161 759 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 BEND6Q5SZJ8 279 aaPredicted RBP23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 ZNF772Q68DY9 489 aaPredicted RBP23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 TRIM59Q8IWR1 403 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 ZC3H3Q8IXZ2 948 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 CYP2W1Q8TAV3 490 aa23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 IFIH1Q9BYX4 1025 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-203ENST00000359902 TCP10L2B9ZVM9 353 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 PABPC4Q13310 644 aaKnown RBP eCLIP23.02■■□□□ 1.282e-9■■□□□ 12.8
CCDC88B-203ENST00000359902 KIAA1755Q5JYT7 1200 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 ARHGAP27Q6ZUM4 889 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 SECISBP2LQ93073 1101 aaKnown RBP23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 ZHX3Q9H4I2 956 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 ANO9A1A5B4 782 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 PIK3CDO00329 1044 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 NOL4O94818 638 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 CYP3A4P08684 503 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms