RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TBCKQ8TEA7 893 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 FAM167BQ9BTA0 163 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 CCDC87Q9NVE4 849 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 GCNT4Q9P109 453 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 CLIC2O15247 247 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 MLXIPQ9HAP2 919 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 KLC4Q9NSK0 619 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 ABCA6Q8N139 1617 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 MT-ND3P03897 115 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 CUL4BQ13620 913 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 MMEL1Q495T6 779 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 FAM47EQ6ZV65 393 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 CCDC125Q86Z20 511 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 TRIM42Q8IWZ5 723 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 HAUS1Q96CS2 278 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 H7C0C1 242 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 ATP5OP48047 213 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 IQCB1Q15051 598 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 ZC3H18Q86VM9 953 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 PARP9Q8IXQ6 854 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 CXorf38Q8TB03 319 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 PPWD1Q96BP3 646 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 SPDL1Q96EA4 605 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 NT5C1BQ96P26 610 aa21.15■□□□□ 0.98
CCDC88B-202ENST00000356786 MFAP3P55082 362 aa21.14■□□□□ 0.98
CCDC88B-202ENST00000356786 ESRRGP62508 458 aa21.14■□□□□ 0.98
CCDC88B-202ENST00000356786 CDAN1Q8IWY9 1227 aa21.14■□□□□ 0.98
CCDC88B-202ENST00000356786 PDZD8Q8NEN9 1154 aa21.14■□□□□ 0.98
CCDC88B-202ENST00000356786 RBM17Q96I25 401 aaKnown RBP21.14■□□□□ 0.98
CCDC88B-202ENST00000356786 ANGPTL2Q9UKU9 493 aa21.14■□□□□ 0.98
CCDC88B-202ENST00000356786 TRIM49BA6NDI0 452 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 GPC4O75487 556 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 NBPF10Q6P3W6 841 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 NFRKBQ6P4R8 1299 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 DISC1Q9NRI5 854 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 EMILIN3Q9NT22 766 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 LMTK2Q8IWU2 1503 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 PRPF3O43395 683 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 PRPF6O94906 941 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 GNPTABQ3T906 1256 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 CYTH2Q99418 400 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 PCDHA1Q9Y5I3 950 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 SAT1P21673 171 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 YWHAEP62258 255 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 PPP2R2AP63151 447 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 TMED1Q13445 227 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 DEPTORQ8TB45 409 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 SCYL1Q96KG9 808 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 OSBPL9Q96SU4 736 aa21.14■□□□□ 0.97
CCDC88B-202ENST00000356786 PDHA1P08559 390 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 TMOD1P28289 359 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 POLR2BP30876 1174 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 LIG4P49917 911 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 CDKL2Q92772 493 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 DPF2Q92785 391 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 TTC26A0AVF1 554 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 ERVV-2B6SEH9 535 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 LRRC63Q05C16 580 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 XKR9Q5GH70 373 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 FBXW10Q5XX13 1052 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 PIP4K2CQ8TBX8 421 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 KCNV2Q8TDN2 545 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 KCNG1Q9UIX4 513 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 PRAMEF22A3QJZ6 481 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 MGEA5O60502 916 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 NLRX1Q86UT6 975 aa21.13■□□□□ 0.97
CCDC88B-202ENST00000356786 BPIFB4P59827 614 aa21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 ARL6IP4Q66PJ3 421 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 THRAP3Q9Y2W1 955 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 MFSD14BQ5SR56 506 aa21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 DPP8Q6V1X1 898 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 MEFVO15553 781 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 GUCY1A3Q02108 690 aa21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 TBC1D22AQ8WUA7 517 aa21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 ATP6V1G3Q96LB4 118 aa21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 ST13P4Q8IZP2 240 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-202ENST00000356786 EIF4E1BA6NMX2 242 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 KCNJ6P48051 423 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 PHEXP78562 749 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 GRAMD1BQ3KR37 738 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 ZNF579Q8NAF0 562 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 ARMC2Q8NEN0 867 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 TEKT1Q969V4 418 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 VTI1AQ96AJ9 217 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 STOML1Q9UBI4 398 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 KIF1CO43896 1103 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 DCTN3O75935 186 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 ATP1A1P05023 1023 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 SATB1Q01826 763 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 CHRNDQ07001 517 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 CAPRIN2Q6IMN6 1127 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 TRAPPC3LQ5T215 181 aa21.11■□□□□ 0.97
CCDC88B-202ENST00000356786 NOP56O00567 594 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 NCK2O43639 380 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 FBXO11Q86XK2 927 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 LCORLQ8N3X6 602 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 LRGUKQ96M69 825 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 STMN1P16949 149 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 ZNF710Q8N1W2 664 aa21.1■□□□□ 0.97
CCDC88B-202ENST00000356786 CENPKQ9BS16 269 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms