RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 AP3B2Q13367 1082 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 BRD3Q15059 726 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 PAPD7Q5XG87 772 aaKnown RBP17.12■□□□□ 0.33
UPF3B-202ENST00000345865 SMCR8Q8TEV9 937 aaPredicted RBP17.12■□□□□ 0.33
UPF3B-202ENST00000345865 SCFD1Q8WVM8 642 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 GMCL1Q96IK5 515 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 CCDC42Q96M95 316 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 TSG101Q99816 390 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 ATRNL1Q5VV63 1379 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 MACROD2A1Z1Q3 448 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 SPATA31C1P0DKV0 1188 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 BEND6Q5SZJ8 279 aaPredicted RBP17.12■□□□□ 0.33
UPF3B-202ENST00000345865 RRAGAQ7L523 313 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 CCDC84Q86UT8 332 aaPredicted RBP17.12■□□□□ 0.33
UPF3B-202ENST00000345865 FBXO11Q86XK2 927 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 SPICE1Q8N0Z3 855 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 CYP2W1Q8TAV3 490 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 MMS19Q96T76 1030 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 KCTD10Q9H3F6 313 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 COL4A3BPQ9Y5P4 624 aa17.12■□□□□ 0.33
UPF3B-202ENST00000345865 MEIS1O00470 390 aa17.11■□□□□ 0.33
UPF3B-202ENST00000345865 HOXA13P31271 388 aaPredicted RBP17.11■□□□□ 0.33
UPF3B-202ENST00000345865 VAV2P52735 878 aa17.11■□□□□ 0.33
UPF3B-202ENST00000345865 VSNL1P62760 191 aa17.11■□□□□ 0.33
UPF3B-202ENST00000345865 HERC4Q5GLZ8 1057 aaPredicted RBP17.11■□□□□ 0.33
UPF3B-202ENST00000345865 SYDE2Q5VT97 1194 aa17.11■□□□□ 0.33
UPF3B-202ENST00000345865 MOXD1Q6UVY6 613 aa17.11■□□□□ 0.33
UPF3B-202ENST00000345865 SLFN12Q8IYM2 578 aa17.11■□□□□ 0.33
UPF3B-202ENST00000345865 BMP2KQ9NSY1 1161 aaPredicted RBP17.11■□□□□ 0.33
UPF3B-202ENST00000345865 MYH10P35580 1976 aa17.11■□□□□ 0.33
UPF3B-202ENST00000345865 FRMD3A2A2Y4 597 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 EIF4A3P38919 411 aaKnown RBP17.1■□□□□ 0.33
UPF3B-202ENST00000345865 MMP14P50281 582 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 CASP5P51878 434 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 IKQ13123 557 aaPredicted RBP17.1■□□□□ 0.33
UPF3B-202ENST00000345865 KIAA1755Q5JYT7 1200 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 CCDC65Q8IXS2 484 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 HNRNPLLQ8WVV9 542 aaKnown RBP17.1■□□□□ 0.33
UPF3B-202ENST00000345865 IQCDQ96DY2 449 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 SUGCTQ9HAC7 445 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 SAR1BQ9Y6B6 198 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 NOL4O94818 638 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 BMP3P12645 472 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 SREBF1P36956 1147 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 ECE1P42892 770 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 KIF11P52732 1056 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 APBA1Q02410 837 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 Q4G0T1 1027 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 CSRNP1Q96S65 589 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 TANGO6Q9C0B7 1094 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 ABCB6Q9NP58 842 aa17.1■□□□□ 0.33
UPF3B-202ENST00000345865 ZCCHC17Q9NP64 241 aaKnown RBP17.1■□□□□ 0.33
UPF3B-202ENST00000345865 MAP2K7O14733 419 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 ZNF185O15231 689 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 IPO7O95373 1038 aaKnown RBP17.09■□□□□ 0.33
UPF3B-202ENST00000345865 HOXA7P31268 230 aaPredicted RBP17.09■□□□□ 0.33
UPF3B-202ENST00000345865 BCAS3Q9H6U6 928 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 EMILIN3Q9NT22 766 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 PCDHA13Q9Y5I0 950 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 ENTPD3O75355 529 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 LCA5LO95447 670 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 KIF5AQ12840 1032 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 PABPC4Q13310 644 aaKnown RBP eCLIP17.09■□□□□ 0.33
UPF3B-202ENST00000345865 ASTE1Q2TB18 679 aaPredicted RBP17.09■□□□□ 0.33
UPF3B-202ENST00000345865 RBM26Q5T8P6 1007 aaKnown RBP17.09■□□□□ 0.33
UPF3B-202ENST00000345865 PDXDC1Q6P996 788 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 BTNL9Q6UXG8 535 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 CAPZA3Q96KX2 299 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 IFIH1Q9BYX4 1025 aaKnown RBP17.09■□□□□ 0.33
UPF3B-202ENST00000345865 CAPN6Q9Y6Q1 641 aa17.09■□□□□ 0.33
UPF3B-202ENST00000345865 MSH4O15457 936 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 GIT2Q14161 759 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 SMC1AQ14683 1233 aaKnown RBP17.08■□□□□ 0.33
UPF3B-202ENST00000345865 SPA17Q15506 151 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 CCDC40Q4G0X9 1142 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 HGSNATQ68CP4 663 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 SLC30A10Q6XR72 485 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 TRIM59Q8IWR1 403 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 EHBP1Q8NDI1 1231 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 ZHX3Q9H4I2 956 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 MLXIPQ9HAP2 919 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 NLRC4Q9NPP4 1024 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 PRR12Q9ULL5 1215 aa17.08■□□□□ 0.33
UPF3B-202ENST00000345865 SPDYE3A6NKU9 549 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 POTEB2H3BUK9 544 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 PDE2AO00408 941 aaPredicted RBP17.08■□□□□ 0.32
UPF3B-202ENST00000345865 POLR3GO15318 223 aaPredicted RBP17.08■□□□□ 0.32
UPF3B-202ENST00000345865 RPA1P27694 616 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 TUBB4BP68371 445 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 ZNF771Q7L3S4 317 aaPredicted RBP17.08■□□□□ 0.32
UPF3B-202ENST00000345865 NEK11Q8NG66 645 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 ACER1Q8TDN7 264 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 TBC1D5Q92609 795 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 ZBTB9Q96C00 473 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 CEP63Q96MT8 703 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 CRACR2AQ9BSW2 395 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 POLD4Q9HCU8 107 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 SALL4Q9UJQ4 1053 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 L1RE1Q9UN81 338 aa17.08■□□□□ 0.32
UPF3B-202ENST00000345865 TBX3O15119 743 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms