RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 FERMT2Q96AC1 680 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 NOX5Q96PH1 765 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 XPO6Q96QU8 1125 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 IFIH1Q9BYX4 1025 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 THAP9Q9H5L6 903 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 KCNMB3Q9NPA1 279 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 PAG1Q9NWQ8 432 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 LMCD1Q9NZU5 365 aa8.92□□□□□ -0.98
ATG4A-201ENST00000343524 ANGEL1Q9UNK9 670 aaKnown RBP8.92□□□□□ -0.98
ATG4A-201ENST00000343524 MAST3O60307 1309 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 O00370 1275 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 ZSCAN9O15535 394 aaPredicted RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 RNF113AO15541 343 aaKnown RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 EVI5O60447 810 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 ACADSP16219 412 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 TRIM21P19474 475 aaKnown RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 ATP6V1C1P21283 382 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 PSMC4P43686 418 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 CARSP49589 748 aaKnown RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 KLC1Q07866 573 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 DBN1Q16643 649 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 CCDC152Q4G0S7 254 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 SH2D4BQ5SQS7 431 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 ACBD5Q5T8D3 534 aaPredicted RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 RRAGBQ5VZM2 374 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 NUGGCQ68CJ6 796 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 WDR59Q6PJI9 974 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 DDX46Q7L014 1031 aaKnown RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 MKL1Q969V6 931 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 EDC3Q96F86 508 aaKnown RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 PAGE5Q96GU1 130 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 TRIM7Q9C029 511 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 FAM192AQ9GZU8 254 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 STMN4Q9H169 189 aaPredicted RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 CCDC134Q9H6E4 229 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 RBM12Q9NTZ6 932 aaKnown RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 RYDENQ9NUL5 291 aaKnown RBP8.91□□□□□ -0.98
ATG4A-201ENST00000343524 PLA2G2EQ9NZK7 142 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 L3MBTL1Q9Y468 752 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 GMEB1Q9Y692 573 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 NID2Q14112 1375 aa8.91□□□□□ -0.98
ATG4A-201ENST00000343524 COL5A2P05997 1499 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-201ENST00000343524 CICQ96RK0 1608 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-201ENST00000343524 PJA2O43164 708 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 LCA5LO95447 670 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 PENKP01210 267 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-201ENST00000343524 MMP1P03956 469 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 HSD17B3P37058 310 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 PPP1R2P41236 205 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 GUCY2FP51841 1108 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 SSRP1Q08945 709 aaKnown RBP8.9□□□□□ -0.98
ATG4A-201ENST00000343524 ZNF844Q08AG5 666 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 NEXNQ0ZGT2 675 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 C1QTNF12Q5T7M4 302 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 ZNF658Q5TYW1 1059 aaPredicted RBP8.9□□□□□ -0.98
ATG4A-201ENST00000343524 CHST3Q7LGC8 479 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 PIGWQ7Z7B1 504 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 MAIP1Q8WWC4 291 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 NELFBQ8WX92 580 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 TMEM87BQ96K49 555 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 LACRTQ9GZZ8 138 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 GPR108Q9NPR9 543 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 EXOC1Q9NV70 894 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 CTTNBP2NLQ9P2B4 639 aa8.9□□□□□ -0.98
ATG4A-201ENST00000343524 MYH13Q9UKX3 1938 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 CTNND1O60716 968 aaKnown RBP8.9□□□□□ -0.99
ATG4A-201ENST00000343524 GLI1P08151 1106 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 PARP1P09874 1014 aaKnown RBP8.9□□□□□ -0.99
ATG4A-201ENST00000343524 SRGNP10124 158 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 CDC25AP30304 524 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 HNRNPH3P31942 346 aaKnown RBP8.9□□□□□ -0.99
ATG4A-201ENST00000343524 PCK1P35558 622 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 ALDH5A1P51649 535 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-201ENST00000343524 HLTFQ14527 1009 aaKnown RBP eCLIP8.9□□□□□ -0.99
ATG4A-201ENST00000343524 NFRKBQ6P4R8 1299 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 TRIM22Q8IYM9 498 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 GRAMD1CQ8IYS0 662 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 IL17REQ8NFR9 667 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 SH3TC2Q8TF17 1288 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.9□□□□□ -0.99
ATG4A-201ENST00000343524 CASKIN2Q8WXE0 1202 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 CCDC28BQ9BUN5 200 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 ZWILCHQ9H900 591 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 DMAP1Q9NPF5 467 aaPredicted RBP8.9□□□□□ -0.99
ATG4A-201ENST00000343524 LRWD1Q9UFC0 647 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 TMCO1Q9UM00 188 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 C2CD2Q9Y426 696 aa8.9□□□□□ -0.99
ATG4A-201ENST00000343524 DPPA5A6NC42 116 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 H0YGN5 161 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 RNF225M0QZC1 329 aaPredicted RBP8.89□□□□□ -0.99
ATG4A-201ENST00000343524 ZBTB43O43298 467 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 GTPBP6O43824 516 aaPredicted RBP8.89□□□□□ -0.99
ATG4A-201ENST00000343524 LMNAP02545 664 aaKnown RBP8.89□□□□□ -0.99
ATG4A-201ENST00000343524 FAM153BP0C7A2 387 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 CSB-PGBD3P0DP91 1061 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 DESP17661 470 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 MSH2P43246 934 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 CD151P48509 253 aa8.89□□□□□ -0.99
ATG4A-201ENST00000343524 PDE6CP51160 858 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms