RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ADGRG1Q9Y653 693 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 MORC2Q9Y6X9 1032 aaPredicted RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 POGZQ7Z3K3 1410 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 POTEMA6NI47 508 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 TOM1L1O75674 476 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 FMNL1O95466 1100 aaPredicted RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 CD58P19256 250 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 NCF2P19878 526 aaPredicted RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 MAPK4P31152 587 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 MAN2A1Q16706 1144 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 CCDC93Q567U6 631 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 MB21D1Q8N884 522 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 NEK9Q8TD19 979 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 MS4A14Q96JA4 679 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 TSPYL2Q9H2G4 693 aaPredicted RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 SMYD3Q9H7B4 428 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 DISC1Q9NRI5 854 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 C1orf112Q9NSG2 853 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 ANAPC5Q9UJX4 755 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 WDR7Q9Y4E6 1490 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 EXOC1LA0A1B0GW35 172 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 HNRNPDLO14979 420 aaKnown RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 DDIT3P35638 169 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 PRCPP42785 496 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 LIG4P49917 911 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 IGBP1P78318 339 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 SYCP2LQ5T4T6 812 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 C4orf50Q6ZRC1 276 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 DHX40Q8IX18 779 aaKnown RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 OR2W6PQ8NHA6 318 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 SEPT8Q92599 483 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 PIH1D3Q9NQM4 214 aaKnown RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 LARSQ9P2J5 1176 aaKnown RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 TCP10L2B9ZVM9 353 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 SSTR3P32745 418 aaPredicted RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 SEC24CP53992 1094 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 FAM98CQ17RN3 349 aaKnown RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 FAM186BQ8IYM0 893 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 TTC17Q96AE7 1141 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 PPME1Q9Y570 386 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 MROH5Q6ZUA9 1318 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 IQGAP3Q86VI3 1631 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 LRRC53A6NM62 1247 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 SH2B2O14492 632 aaPredicted RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 KRT14P02533 472 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 HOXA13P31271 388 aaPredicted RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 BTDP43251 543 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 DR1Q01658 176 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 JADE1Q6IE81 842 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 USP49Q70CQ1 688 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 RNF168Q8IYW5 571 aaPredicted RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 DEPTORQ8TB45 409 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 PIGOQ8TEQ8 1089 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 FBXO41Q8TF61 875 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 JDP2Q8WYK2 163 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 ZMYND12Q9H0C1 365 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 ATP8A2Q9NTI2 1148 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 ZBTB1Q9Y2K1 713 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 KIF28PB7ZC32 967 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 TOM1O60784 492 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 TADA3O75528 432 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 GNA14O95837 355 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 CDC27P30260 824 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 SLC8A3P57103 927 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 ARHGAP4P98171 946 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 ITKQ08881 620 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 NLRX1Q86UT6 975 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 SPATS2Q86XZ4 545 aaKnown RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 TTC1Q99614 292 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 LRRC1Q9BTT6 524 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 PITPNM3Q9BZ71 974 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 ARHGEF10LQ9HCE6 1279 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 EMILIN3Q9NT22 766 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 NXF1Q9UBU9 619 aaKnown RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 NOC2LQ9Y3T9 749 aaKnown RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 SRPRBQ9Y5M8 271 aaKnown RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 COL4A3BPQ9Y5P4 624 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 MED23Q9ULK4 1368 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 FAM205CA6NFA0 338 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 GPC4O75487 556 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 GDF11O95390 407 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 PHKG2P15735 406 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 IFNAR1P17181 557 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 LRRC36Q1X8D7 754 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 TRMT10CQ7L0Y3 403 aaKnown RBP9.41□□□□□ -0.9
RTN3-202ENST00000339997 CCDC87Q9NVE4 849 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 GON4LQ3T8J9 2241 aa9.41□□□□□ -0.9
RTN3-202ENST00000339997 PI4K2BG5E9Z4 385 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 DNAJC6O75061 913 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 ECEL1O95672 775 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 CYP2D6P10635 497 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 CCNE1P24864 410 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 PARP10Q53GL7 1025 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 RAPH1Q70E73 1250 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 TBC1D10CQ8IV04 446 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 FAM149B1Q96BN6 582 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 APOL6Q9BWW8 343 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 RNF26Q9BY78 433 aaPredicted RBP9.4□□□□□ -0.9
RTN3-202ENST00000339997 GOLPH3Q9H4A6 298 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 CHUKO15111 745 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms