RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GRID2IPA4D2P6 1211 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 IRS4O14654 1257 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 CTNND1O60716 968 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 FAM228BP0C875 321 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 KCNMA1Q12791 1236 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 PDXDC1Q6P996 788 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 NUP188Q5SRE5 1749 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 CCT8L1PA6NM43 557 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 ARL6IP4Q66PJ3 421 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 FAM114A1Q8IWE2 563 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 BLIDQ8IZY5 108 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 MAGEC3Q8TD91 643 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 AGAP11Q8TF27 550 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 RSRC1Q96IZ7 334 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 AGAP1Q9UPQ3 857 aa14.76□□□□□ -0.05
CCDC88C-201ENST00000331194 C5orf60A6NFR6 353 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 A8MUI8 341 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 SART1O43290 800 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 ORC4O43929 436 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 PUM3Q15397 648 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 STAG2Q8N3U4 1231 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 KIF1AQ12756 1690 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 GLI3P10071 1580 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 CAND2O75155 1236 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 MYBL1P10243 752 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 KCNJ2P63252 427 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 GRIK3Q13003 919 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 BZW1Q7L1Q6 419 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 CCDC63Q8NA47 563 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 COL5A2P05997 1499 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 UBAP1LF5GYI3 381 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 MPHOSPH10O00566 681 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 HGSO14964 777 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 DNAJC8O75937 253 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 MYBP10242 640 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 RCAN1P53805 252 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 POLR2FP61218 127 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 DHX9Q08211 1270 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 NAB2Q15742 525 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 CABP7Q86V35 215 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 SPICE1Q8N0Z3 855 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 PIGBQ92521 554 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 ZNF570Q96NI8 536 aa14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 TRMT112Q9UI30 125 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-201ENST00000331194 TLDC2A0PJX2 215 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 DIAPH2O60879 1101 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 SHBGP04278 402 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 FGFR2P21802 821 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 TRAPPC10P48553 1259 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 TNNC1P63316 161 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 PFKFB3Q16875 520 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 UBAP2Q5T6F2 1119 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 LRIG3Q6UXM1 1119 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 RNF10Q8N5U6 811 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 C1orf131Q8NDD1 294 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 UHMK1Q8TAS1 419 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 ELAC2Q9BQ52 826 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 KDM4CQ9H3R0 1056 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 TMOD3Q9NYL9 352 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 THRAP3Q9Y2W1 955 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 TTI1O43156 1089 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 TECP42680 631 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 NLRP10Q86W26 655 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 DNAJC10Q8IXB1 793 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 MICAL1Q8TDZ2 1067 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 PARD3BQ8TEW8 1205 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 ZBTB10Q96DT7 871 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 CHMP6Q96FZ7 201 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 C8orf37Q96NL8 207 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 XPO6Q96QU8 1125 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 SELENOSQ9BQE4 189 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 PLA2G12BQ9BX93 195 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 ABCF3Q9NUQ8 709 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 ATP8A1Q9Y2Q0 1164 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 MYH1P12882 1939 aa14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 PHRF1Q9P1Y6 1649 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-201ENST00000331194 PCDH11XQ9BZA7 1347 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 PCDH11YQ9BZA8 1340 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 BAZ2AQ9UIF9 1905 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 CCDC194A0A1B0GVG4 234 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 COPB2P35606 906 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 C11orf91Q3C1V1 193 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 RUFY4Q6ZNE9 571 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 ADAT2Q7Z6V5 191 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 KIF2BQ8N4N8 673 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 CCDC197Q8NCU1 140 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 FAM167BQ9BTA0 163 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 FLT1P17948 1338 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 KIF3CO14782 793 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 NOL4O94818 638 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 CHN1P15882 459 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 GNAT2P19087 354 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 IFNAR2P48551 515 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 IFFO1Q0D2I5 559 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 MAN2A1Q16706 1144 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 NBPF9Q3BBW0 867 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 LRRC34Q8IZ02 419 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 FAM133AQ8N9E0 248 aa14.73□□□□□ -0.05
CCDC88C-201ENST00000331194 CPVLQ9H3G5 476 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms