RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 C21orf2O43822 256 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 SRGAP2O75044 1071 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 ENTPD3O75355 529 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 CCDC65Q8IXS2 484 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 SLFN12Q8IYM2 578 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 CCDC42Q96M95 316 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 ARFGAP3Q9NP61 516 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 MACROD2A1Z1Q3 448 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 CTAGE15A4D2H0 777 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 LRRC53A6NM62 1247 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 KRT86O43790 486 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 KRT18P05783 430 aaKnown RBP22.24■■□□□ 1.15
VPS53-201ENST00000291074 CTAGE8P0CG41 777 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 SLC12A3P55017 1021 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 CCDC40Q4G0X9 1142 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 KIAA1755Q5JYT7 1200 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 RRAGAQ7L523 313 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 TRAPPC11Q7Z392 1133 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 CTAGE6Q86UF2 777 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 CTAGE4Q8IX94 777 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 COL4A3BPQ9Y5P4 624 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 TNS1Q9HBL0 1735 aaKnown RBP22.23■■□□□ 1.15
VPS53-201ENST00000291074 FKBP3Q00688 224 aaKnown RBP22.23■■□□□ 1.15
VPS53-201ENST00000291074 GABPB1Q06547 395 aaPredicted RBP22.23■■□□□ 1.15
VPS53-201ENST00000291074 CC2D2BQ6DHV5 1058 aa22.23■■□□□ 1.15
VPS53-201ENST00000291074 SCFD1Q8WVM8 642 aa22.23■■□□□ 1.15
VPS53-201ENST00000291074 PRR12Q9ULL5 1215 aa22.23■■□□□ 1.15
VPS53-201ENST00000291074 CDK17Q00537 523 aa22.23■■□□□ 1.15
VPS53-201ENST00000291074 KCNMA1Q12791 1236 aa22.23■■□□□ 1.15
VPS53-201ENST00000291074 PABPC4Q13310 644 aaKnown RBP eCLIP22.23■■□□□ 1.15
VPS53-201ENST00000291074 MOXD1Q6UVY6 613 aa22.23■■□□□ 1.15
VPS53-201ENST00000291074 SLC30A10Q6XR72 485 aa22.23■■□□□ 1.15
VPS53-201ENST00000291074 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.23■■□□□ 1.15
VPS53-201ENST00000291074 SREBF1P36956 1147 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 ACER1Q8TDN7 264 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 BAP1Q92560 729 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 MYH10P35580 1976 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 SPATA31C1P0DKV0 1188 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 HNRNPH3P31942 346 aaKnown RBP22.22■■□□□ 1.15
VPS53-201ENST00000291074 EIF4A3P38919 411 aaKnown RBP22.22■■□□□ 1.15
VPS53-201ENST00000291074 CASP5P51878 434 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 CYP4A11Q02928 519 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 ZNF662Q6ZS27 426 aa22.22■■□□□ 1.15
VPS53-201ENST00000291074 CCDC84Q86UT8 332 aaPredicted RBP22.22■■□□□ 1.15
VPS53-201ENST00000291074 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.22■■□□□ 1.15
VPS53-201ENST00000291074 VAV2P52735 878 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 Q4G0T1 1027 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 UTP14CQ5TAP6 766 aaKnown RBP22.21■■□□□ 1.15
VPS53-201ENST00000291074 HAUS3Q68CZ6 603 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 MSANTD4Q8NCY6 345 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 CCDC151A5D8V7 595 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 MSH4O15457 936 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 KIF11P52732 1056 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 APBA1Q02410 837 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 LONRF2Q1L5Z9 754 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 CAPZA3Q96KX2 299 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 FUT8Q9BYC5 575 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 KCTD10Q9H3F6 313 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 POLD4Q9HCU8 107 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 EMILIN3Q9NT22 766 aa22.21■■□□□ 1.15
VPS53-201ENST00000291074 SPA17Q15506 151 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 CRACR2AQ9BSW2 395 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 BCAS3Q9H6U6 928 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 NLRC4Q9NPP4 1024 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 RNF216Q9NWF9 866 aaPredicted RBP22.2■■□□□ 1.14
VPS53-201ENST00000291074 RAD17O75943 681 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 MMP14P50281 582 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 BTNL9Q6UXG8 535 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 CDAN1Q8IWY9 1227 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 NEK11Q8NG66 645 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 TBC1D5Q92609 795 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 IQCDQ96DY2 449 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 SAR1BQ9Y6B6 198 aa22.2■■□□□ 1.14
VPS53-201ENST00000291074 KIF5AQ12840 1032 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 BRD3Q15059 726 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 TERF2Q15554 542 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 FOXR2Q6PJQ5 311 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 ZBTB9Q96C00 473 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 PURBQ96QR8 312 aaKnown RBP22.19■■□□□ 1.14
VPS53-201ENST00000291074 MMS19Q96T76 1030 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 IFIH1Q9BYX4 1025 aaKnown RBP22.19■■□□□ 1.14
VPS53-201ENST00000291074 DEF6Q9H4E7 631 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 FRMD3A2A2Y4 597 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 CACNA2D4Q7Z3S7 1137 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 EHBP1Q8NDI1 1231 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 REEP2Q9BRK0 252 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 MLXIPQ9HAP2 919 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 PCDHA13Q9Y5I0 950 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 PSME4Q14997 1843 aa22.19■■□□□ 1.14
VPS53-201ENST00000291074 SPDYE2BA6NHP3 402 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 FOSP01100 380 aaPredicted RBP22.18■■□□□ 1.14
VPS53-201ENST00000291074 SPDYE6P0CI01 402 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 RPA1P27694 616 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 HOXA7P31268 230 aaPredicted RBP22.18■■□□□ 1.14
VPS53-201ENST00000291074 VSNL1P62760 191 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 GIT2Q14161 759 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 FAM83BQ5T0W9 1011 aa22.18■■□□□ 1.14
VPS53-201ENST00000291074 PAPD7Q5XG87 772 aaKnown RBP22.18■■□□□ 1.14
VPS53-201ENST00000291074 ZNF772Q68DY9 489 aaPredicted RBP22.18■■□□□ 1.14
VPS53-201ENST00000291074 PDXDC1Q6P996 788 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms