RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 LRRC47Q8N1G4 583 aaKnown RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 CAPZA3Q96KX2 299 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 IQCGQ9H095 443 aaKnown RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 ABCB11O95342 1321 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 AKR1B10O60218 316 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 HPDP32754 393 aaPredicted RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 ADAT2Q7Z6V5 191 aaKnown RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 DDX42Q86XP3 938 aaKnown RBP eCLIP8.53□□□□□ -1.04
USP3-201ENST00000268049 IFNL3Q8IZI9 196 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 ZNF280CQ8ND82 737 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 RABGGTAQ92696 567 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 NCAPGQ9BPX3 1015 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 TDRD3Q9H7E2 651 aaKnown RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 KDM6AO15550 1401 aaPredicted RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 KIF20BQ96Q89 1820 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 UBE2Q2LH0YL09 131 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 N4BP3O15049 544 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 MCM7P33993 719 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 RASGRF1Q13972 1273 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 TPH2Q8IWU9 490 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 C17orf53Q8N3J3 647 aaPredicted RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 SELENOOQ9BVL4 669 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 OSBPL5Q9H0X9 879 aaPredicted RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 RPF1Q9H9Y2 349 aaKnown RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 MYPNQ86TC9 1320 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 NCAM2O15394 837 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 RAD51Q06609 339 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 TUBB2AQ13885 445 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 TMEM132BQ14DG7 1078 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 TRIM68Q6AZZ1 485 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 CTAGE1Q96RT6 745 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 TUBB2BQ9BVA1 445 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 CARD6Q9BX69 1037 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 STN1Q9H668 368 aaKnown RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 SNAP23O00161 211 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 KRT86O43790 486 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 CYP2E1P05181 493 aaPredicted RBP8.52□□□□□ -1.04
USP3-201ENST00000268049 JAK3P52333 1124 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 COG2Q14746 738 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 UCMAQ8WVF2 138 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 IFT81Q8WYA0 676 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 LPAR1Q92633 364 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 STAMQ92783 540 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 LZTFL1Q9NQ48 299 aa8.52□□□□□ -1.04
USP3-201ENST00000268049 FAF1Q9UNN5 650 aaPredicted RBP8.52□□□□□ -1.04
USP3-201ENST00000268049 NEMP1O14524 444 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 N4BP1O75113 896 aaKnown RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 CRCPO75575 148 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 CABYRO75952 493 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 MECOMQ03112 1051 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 RASA3Q14644 834 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 C8orf34Q49A92 452 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 FAM47AQ5JRC9 791 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 RASIP1Q5U651 963 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 DSCC1Q9BVC3 393 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 USH1CQ9Y6N9 552 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 PFASO15067 1338 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 MAP2P11137 1827 aaKnown RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 E7EVH7 732 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 COG7P83436 770 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 FOXO4P98177 505 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 PPFIA1Q13136 1202 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 ZNF827Q17R98 1081 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 MUM1Q2TAK8 710 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 PDXDC2PQ6P474 469 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 SPICE1Q8N0Z3 855 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 TSEN34Q9BSV6 310 aaKnown RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 VCX3AQ9NNX9 186 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 TLR7Q9NYK1 1049 aaKnown RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 LARSQ9P2J5 1176 aaKnown RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 CHD2O14647 1828 aaKnown RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 STXBP3O00186 592 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 SORBS3O60504 671 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 LRG1P02750 347 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 TPD52P55327 224 aaPredicted RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 KRT83P78385 493 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 SNX17Q15036 470 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 MAP1SQ66K74 1059 aaPredicted RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 NOP9Q86U38 636 aaKnown RBP8.52□□□□□ -1.05
USP3-201ENST00000268049 TMEM169Q96HH4 297 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 DACT1Q9NYF0 836 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 MOSPD1Q9UJG1 213 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 AGTPBP1Q9UPW5 1226 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 KNDC1Q76NI1 1749 aa8.52□□□□□ -1.05
USP3-201ENST00000268049 TLDC2A0PJX2 215 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 ENTPD3O75355 529 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 DDAH1O94760 285 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 PRKCQQ04759 706 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 CNNM4Q6P4Q7 775 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 CEP68Q76N32 757 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 TMX3Q96JJ7 454 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 RNF146Q9NTX7 359 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 SGSM2O43147 1006 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 EFCAB14O75071 495 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 HIP1RO75146 1068 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 CYP4A11Q02928 519 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 PDIA6Q15084 440 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 SNX29Q8TEQ0 813 aa8.51□□□□□ -1.05
USP3-201ENST00000268049 SH3TC2Q8TF17 1288 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms