RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 JRKLQ9Y4A0 524 aa11.82□□□□□ -0.52
USP28-201ENST00000003302 HNRNPH3P31942 346 aaKnown RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 PPP4CP60510 307 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 GRAPQ13588 217 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 RAPGEF1Q13905 1077 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 TBC1D10BQ4KMP7 808 aaPredicted RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 FBXW10Q5XX13 1052 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 LEKR1Q6ZMV7 388 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 PALB2Q86YC2 1186 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 GRAPLQ8TC17 118 aaPredicted RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 CASKIN2Q8WXE0 1202 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 SH2D3AQ9BRG2 576 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP28-201ENST00000003302 SCAF8Q9UPN6 1271 aaKnown RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 GRID2IPA4D2P6 1211 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 PTK2Q05397 1052 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 AADACL2Q6P093 401 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 CPNE8Q86YQ8 564 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 C6orf50Q9HD87 102 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 ZNHIT6Q9NWK9 470 aaKnown RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 GOLGA6CA6NDK9 693 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 GOLGA6DP0CG33 693 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 ECHS1P30084 290 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 COG2Q14746 738 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 SPA17Q15506 151 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 MAN2A1Q16706 1144 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 ZNF571Q7Z3V5 609 aaPredicted RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 KRT25Q7Z3Z0 450 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 CCDC170Q8IYT3 715 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 SMARCC1Q92922 1105 aaPredicted RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 FAM84AQ96KN4 292 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 RASSF4Q9H2L5 321 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 GOLGA6AQ9NYA3 693 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 CLIC2O15247 247 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 MYBP10242 640 aa11.81□□□□□ -0.52
USP28-201ENST00000003302 PABPC4Q13310 644 aaKnown RBP eCLIP11.81□□□□□ -0.529e-6■■■■□ 24.7
USP28-201ENST00000003302 SEC63Q9UGP8 760 aaKnown RBP11.81□□□□□ -0.52
USP28-201ENST00000003302 RAD51CO43502 376 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 HOXA13P31271 388 aaPredicted RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 NAA35Q5VZE5 725 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 OLIG1Q8TAK6 271 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 DDX25Q9UHL0 483 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 FAM184BQ9ULE4 1060 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 AHDC1Q5TGY3 1603 aaPredicted RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 C6orf229H3BNL8 230 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 ZEB2O60315 1214 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 SHMT1P34896 483 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 NOP2P46087 812 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 UBXN2AP68543 259 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 GABPAQ06546 454 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 CNNM4Q6P4Q7 775 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 TRMT1LQ7Z2T5 733 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 CACNA2D4Q7Z3S7 1137 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 CCDC43Q96MW1 224 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 CELF4Q9BZC1 486 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 ANKRD2Q9GZV1 360 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 KCTD10Q9H3F6 313 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 MPHOSPH10O00566 681 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 HEXIM1O94992 359 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 KIAA0753Q2KHM9 967 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 USH1GQ495M9 461 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 WDR66Q8TBY9 1149 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 CALML4Q96GE6 196 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 RNPC3Q96LT9 517 aaKnown RBP11.8□□□□□ -0.52
USP28-201ENST00000003302 FAM107BQ9H098 131 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 PANK4Q9NVE7 773 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 STIM2Q9P246 746 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 BTAF1O14981 1849 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 IGSF9BQ9UPX0 1349 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 LCA5LO95447 670 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 GNGT1P63211 74 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 DDR1Q08345 913 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 TMEM119Q4V9L6 283 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 SOGA3Q5TF21 947 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 SIAH1Q8IUQ4 282 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 CNBD1Q8NA66 436 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 TBC1D16Q8TBP0 767 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 BCAS4Q8TDM0 211 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 RGL1Q9NZL6 768 aa11.8□□□□□ -0.52
USP28-201ENST00000003302 TMCO5BA8MYB1 307 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 UBAP1LF5GYI3 381 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 CYP11B2P19099 503 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 CLK2P49760 499 aaKnown RBP11.79□□□□□ -0.52
USP28-201ENST00000003302 HERC4Q5GLZ8 1057 aaPredicted RBP11.79□□□□□ -0.52
USP28-201ENST00000003302 GUF1Q8N442 669 aaKnown RBP11.79□□□□□ -0.52
USP28-201ENST00000003302 OSGEPQ9NPF4 335 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 ACP6Q9NPH0 428 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 MAST2Q6P0Q8 1798 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 CNTNAP4Q9C0A0 1308 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 TISP43B9A030 160 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 FAM86B1E9PN63 330 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 AKAP3O75969 853 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 BAG3O95817 575 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 FAM86B2P0C5J1 330 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 ERVK-9P63128 1117 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 ZSWIM2Q8NEG5 633 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 TRIM58Q8NG06 486 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 INPP4AQ96PE3 977 aaPredicted RBP11.79□□□□□ -0.52
USP28-201ENST00000003302 DDX47Q9H0S4 455 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms