RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CEP72Q9P209 647 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 GREM1O60565 184 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 PRPF40AO75400 957 aaKnown RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 NUDT3O95989 172 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 GCP02774 474 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 P4HBP07237 508 aaKnown RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 PAMP19021 973 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 CD38P28907 300 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 GBP2P32456 591 aaPredicted RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 CSF2RBP32927 897 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 PMS1P54277 932 aaKnown RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 FAM160A1Q05DH4 1040 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 KRTAP5-1Q6L8H4 278 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 TRMT10BQ6PF06 316 aaKnown RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 CPNE8Q86YQ8 564 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 RIOX2Q8IUF8 465 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 RPUSD2Q8IZ73 545 aaKnown RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 IFNL2Q8IZJ0 200 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 NUDT10Q8NFP7 164 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 DPF3Q92784 378 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 NUDT11Q96G61 164 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 TOE1Q96GM8 510 aaKnown RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 MCMBPQ9BTE3 642 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 PDGFDQ9GZP0 370 aaPredicted RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 KATNBL1Q9H079 304 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 MSL2Q9HCI7 577 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 DTLQ9NZJ0 730 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 CROTQ9UKG9 612 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 WASF3Q9UPY6 502 aa1.31□□□□□ -2.2
VPS35-212ENST00000640313 GNEQ9Y223 722 aaKnown RBP1.31□□□□□ -2.2
VPS35-212ENST00000640313 NPHP3-ACAD11A0A0J9YXS1 232 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 KRTAP23-1A1A580 65 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 C2orf71A6NGG8 1288 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 F6X3S4 739 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 TLR3O15455 904 aaKnown RBP1.3□□□□□ -2.2
VPS35-212ENST00000640313 KNG1P01042 644 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 LRG1P02750 347 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 ITGA4P13612 1032 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 ZNF37AP17032 561 aaPredicted RBP1.3□□□□□ -2.2
VPS35-212ENST00000640313 KRTAP5-9P26371 169 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 HIBADHP31937 336 aaKnown RBP1.3□□□□□ -2.2
VPS35-212ENST00000640313 SEPHS1P49903 392 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 RAC3P60763 192 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 CLCQ05315 142 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 DUSP8Q13202 625 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 AXDND1Q5T1B0 1012 aaPredicted RBP1.3□□□□□ -2.2
VPS35-212ENST00000640313 MROH9Q5TGP6 573 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 DCAF15Q66K64 600 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 TEPPQ6URK8 271 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 TMPRSS6Q8IU80 811 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 REXO1L1PQ8IX06 675 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 GPR150Q8NGU9 434 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 ZSWIM3Q96MP5 696 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 BBC3Q96PG8 261 aaPredicted RBP1.3□□□□□ -2.2
VPS35-212ENST00000640313 MMP19Q99542 508 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 YIPF4Q9BSR8 244 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 NOL6Q9H6R4 1146 aaKnown RBP1.3□□□□□ -2.2
VPS35-212ENST00000640313 RIOX1Q9H6W3 641 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 PARPBPQ9NWS1 579 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 ZNF652Q9Y2D9 606 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 ZNF451Q9Y4E5 1061 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 BACE2Q9Y5Z0 518 aa1.3□□□□□ -2.2
VPS35-212ENST00000640313 SETD1BQ9UPS6 1966 aaKnown RBP1.29□□□□□ -2.2
VPS35-212ENST00000640313 ZAR1LA6NP61 321 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 MINDY4BA8MYZ0 360 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 C22orf46C9J442 243 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 THBDP07204 575 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 CTSHP09668 335 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 CR2P20023 1033 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 GJA4P35212 333 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 RPS19P39019 145 aaKnown RBP1.29□□□□□ -2.2
VPS35-212ENST00000640313 FSTL1Q12841 308 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 MAPK7Q13164 816 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 TCEAL1Q15170 157 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 SMAD2Q15796 467 aaKnown RBP1.29□□□□□ -2.2
VPS35-212ENST00000640313 KRTAP5-4Q6L8H1 288 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 FBXL19Q6PCT2 694 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 GAREM2Q75VX8 874 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 PPFIBP1Q86W92 1011 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 ADGRG3Q86Y34 549 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 Q8N1Y9 231 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 CCDC82Q8N4S0 544 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 ZNF808Q8N4W9 903 aaPredicted RBP1.29□□□□□ -2.2
VPS35-212ENST00000640313 TAB3Q8N5C8 712 aaPredicted RBP1.29□□□□□ -2.2
VPS35-212ENST00000640313 C9orf106Q8NAJ2 232 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 ZDHHC15Q96MV8 337 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 DUSP9Q99956 384 aaKnown RBP1.29□□□□□ -2.2
VPS35-212ENST00000640313 RNF19AQ9NV58 838 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 MARCH2Q9P0N8 246 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 ZNHIT2Q9UHR6 403 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 PACSIN3Q9UKS6 424 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 OAZ3Q9UMX2 235 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 REXO2Q9Y3B8 237 aaKnown RBP1.29□□□□□ -2.2
VPS35-212ENST00000640313 X6R8D5 127 aa1.29□□□□□ -2.2
VPS35-212ENST00000640313 TCRBV5S2A0A599 114 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 ARID3CA6NKF2 412 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 H0Y858 1186 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 STXBP3O00186 592 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 HGSO14964 777 aaPredicted RBP1.28□□□□□ -2.2
VPS35-212ENST00000640313 CBFA2T2O43439 604 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms