RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ITGB5P18084 799 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 MRPS9P82933 396 aaKnown RBP18.92■□□□□ 0.62
CLN3-252ENST00000636907 PGM5Q15124 567 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 MB21D1Q8N884 522 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 LARP4BQ92615 738 aaKnown RBP18.92■□□□□ 0.62
CLN3-252ENST00000636907 RAD54LQ92698 747 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 PXMP2Q9NR77 195 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 DACH1Q9UI36 760 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 UNCXA6NJT0 531 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 MED24O75448 989 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 PSMD10O75832 226 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 DHX8Q14562 1220 aaKnown RBP18.92■□□□□ 0.62
CLN3-252ENST00000636907 MCM6Q14566 821 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 LRCH2Q5VUJ6 765 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 GPAT2Q6NUI2 795 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 SV2BQ7L1I2 683 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 FASTKD5Q7L8L6 764 aaKnown RBP18.92■□□□□ 0.62
CLN3-252ENST00000636907 C7orf25Q9BPX7 421 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 PDCD2LQ9BRP1 358 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 TRIM9Q9C026 710 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 NT5C3AQ9H0P0 336 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 NMRK2Q9NPI5 230 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 RMND1Q9NWS8 449 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 UBIAD1Q9Y5Z9 338 aa18.92■□□□□ 0.62
CLN3-252ENST00000636907 POTEB3A0JP26 581 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 KLRC4O43908 158 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 HERVK_113P62684 666 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 AMPD3Q01432 767 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 ARHGEF16Q5VV41 709 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 HAUS3Q68CZ6 603 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 POTEBQ6S5H4 581 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 OTOP1Q7RTM1 612 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 NIPA1Q7RTP0 329 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 SMYD4Q8IYR2 804 aaPredicted RBP18.91■□□□□ 0.62
CLN3-252ENST00000636907 ERMNQ8TAM6 284 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 ZNF577Q9BSK1 485 aa18.91■□□□□ 0.62
CLN3-252ENST00000636907 GBA2Q9HCG7 927 aaPredicted RBP18.91■□□□□ 0.62
CLN3-252ENST00000636907 A1CFQ9NQ94 594 aaKnown RBP18.91■□□□□ 0.62
CLN3-252ENST00000636907 BCRP11274 1271 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 CD44P16070 742 aaKnown RBP18.9■□□□□ 0.62
CLN3-252ENST00000636907 FKBP1BP68106 108 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 MYL5Q02045 173 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 SNAPC2Q13487 334 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 RIOX2Q8IUF8 465 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 CHST13Q8NET6 341 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 WDR11Q9BZH6 1224 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 CYP39A1Q9NYL5 469 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 KIAA1024Q9UPX6 916 aa18.9■□□□□ 0.62
CLN3-252ENST00000636907 PPP1R3GB7ZBB8 358 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 EML1O00423 815 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 GAS7O60861 476 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 CNMDO75829 334 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 MYCLP12524 364 aaPredicted RBP18.89■□□□□ 0.61
CLN3-252ENST00000636907 PPP2R5CQ13362 524 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 KCNB1Q14721 858 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 KMT5BQ4FZB7 885 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 SARM1Q6SZW1 724 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 CATSPER3Q86XQ3 398 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 PAGR1Q9BTK6 254 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 SPATC1LQ9H0A9 340 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 JADE2Q9NQC1 790 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 KCNH7Q9NS40 1196 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 STK24Q9Y6E0 443 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 E9PMD0 336 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 IPO5O00410 1097 aaKnown RBP18.89■□□□□ 0.61
CLN3-252ENST00000636907 CELF2O95319 508 aaKnown RBP18.89■□□□□ 0.61
CLN3-252ENST00000636907 SPATA31C1P0DKV0 1188 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 OSBPP22059 807 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 RPA1P27694 616 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 ASIC1P78348 528 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 PABPC4Q13310 644 aaKnown RBP eCLIP18.89■□□□□ 0.613e-6■■■■□ 26.6
CLN3-252ENST00000636907 CT47A1Q5JQC4 288 aaPredicted RBP18.89■□□□□ 0.61
CLN3-252ENST00000636907 ZNF658Q5TYW1 1059 aaPredicted RBP18.89■□□□□ 0.61
CLN3-252ENST00000636907 ZNF526Q8TF50 670 aaPredicted RBP18.89■□□□□ 0.61
CLN3-252ENST00000636907 MED15Q96RN5 788 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 TRIM5Q9C035 493 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 MAF1Q9H063 256 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 HSD3B7Q9H2F3 369 aa18.89■□□□□ 0.61
CLN3-252ENST00000636907 POTEFA5A3E0 1075 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 MYMKA6NI61 221 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 CHMP2AO43633 222 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 ERCC5P28715 1186 aaPredicted RBP18.88■□□□□ 0.61
CLN3-252ENST00000636907 ZNF75DP51815 510 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 TPM4P67936 248 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 POTEGQ6S5H5 508 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 TRMT44Q8IYL2 757 aaKnown RBP18.88■□□□□ 0.61
CLN3-252ENST00000636907 EIF2AK1Q9BQI3 630 aaKnown RBP18.88■□□□□ 0.61
CLN3-252ENST00000636907 TEKT3Q9BXF9 490 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 UNC45AQ9H3U1 944 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 AGO4Q9HCK5 861 aaKnown RBP18.88■□□□□ 0.61
CLN3-252ENST00000636907 PKD2L1Q9P0L9 805 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 GDAQ9Y2T3 454 aa18.88■□□□□ 0.61
CLN3-252ENST00000636907 RHOBTB3O94955 611 aa18.87■□□□□ 0.61
CLN3-252ENST00000636907 KLHL10Q6JEL2 608 aa18.87■□□□□ 0.61
CLN3-252ENST00000636907 B3GNT9Q6UX72 402 aa18.87■□□□□ 0.61
CLN3-252ENST00000636907 VSIG10LQ86VR7 867 aa18.87■□□□□ 0.61
CLN3-252ENST00000636907 C2orf69Q8N8R5 385 aa18.87■□□□□ 0.61
CLN3-252ENST00000636907 ENOX1Q8TC92 643 aaKnown RBP18.87■□□□□ 0.61
CLN3-252ENST00000636907 NSUN6Q8TEA1 469 aaKnown RBP18.87■□□□□ 0.61
CLN3-252ENST00000636907 RIT2Q99578 217 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms