RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SLC39A2Q9NP94 309 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 FBXO28Q9NVF7 368 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 RABGAP1Q9Y3P9 1069 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 MED24O75448 989 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 PLA2G4BP0C869 781 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 RPA1P27694 616 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 INPP5BP32019 993 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 GTF2F1P35269 517 aaKnown RBP eCLIP24.61■■□□□ 1.537e-8■■■□□ 17.9
PNKP-220ENST00000627232 ANKRD40Q6AI12 368 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 CNGA4Q8IV77 575 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 A0A1W2PQC6 194 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 POTEB3A0JP26 581 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 LGALS16A8MUM7 142 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 POTECB2RU33 542 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 E9PMD0 336 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 STAT3P40763 770 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 RBL2Q08999 1139 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 POTEBQ6S5H4 581 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 APOBEC3FQ8IUX4 373 aaKnown RBP24.6■■□□□ 1.53
PNKP-220ENST00000627232 TBC1D5Q92609 795 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 VAV3Q9UKW4 847 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 PNMA2Q9UL42 364 aa24.6■■□□□ 1.53
PNKP-220ENST00000627232 ZNF541Q9H0D2 1346 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 RBBP6Q7Z6E9 1792 aaKnown RBP24.59■■□□□ 1.53
PNKP-220ENST00000627232 DYNC1I1O14576 645 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 ZSCAN12O43309 604 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 MFAP3LO75121 409 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 IDEP14735 1019 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 USP14P54578 494 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 NCAPH2Q6IBW4 605 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 CCDC65Q8IXS2 484 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 POLR3CQ9BUI4 534 aaPredicted RBP24.59■■□□□ 1.53
PNKP-220ENST00000627232 ZNF112Q9UJU3 913 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 SCAF8Q9UPN6 1271 aaKnown RBP24.59■■□□□ 1.53
PNKP-220ENST00000627232 ASTN2O75129 1339 aaPredicted RBP24.59■■□□□ 1.53
PNKP-220ENST00000627232 PITPNM2Q9BZ72 1349 aa24.59■■□□□ 1.53
PNKP-220ENST00000627232 FGFR1OPO95684 399 aaKnown RBP24.58■■□□□ 1.53
PNKP-220ENST00000627232 HSD17B4P51659 736 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 GHRHRQ02643 423 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 LRRC63Q05C16 580 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 COASYQ13057 564 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 CATSPER3Q86XQ3 398 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 SAMD3Q8N6K7 520 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 ZNF507Q8TCN5 953 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 SEMA6BQ9H3T3 888 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 PANK4Q9NVE7 773 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 CCPG1Q9ULG6 757 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 ZNF536O15090 1300 aa24.58■■□□□ 1.53
PNKP-220ENST00000627232 FECHP22830 423 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 UBXN1Q04323 297 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 GPBP1Q86WP2 473 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 MB21D1Q8N884 522 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 SLC5A5Q92911 643 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 HPS3Q969F9 1004 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 WDR18Q9BV38 432 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 PARP14Q460N5 1801 aa24.57■■□□□ 1.52
PNKP-220ENST00000627232 GYPCP04921 128 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 SPATA31C1P0DKV0 1188 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 FDX1P10109 184 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 CYP11B2P19099 503 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 DNM2P50570 870 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 SLC12A3P55017 1021 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 NBPF12Q5TAG4 269 aaPredicted RBP24.56■■□□□ 1.52
PNKP-220ENST00000627232 MCF2L2Q86YR7 1114 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 CREBRFQ8IUR6 639 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 NLGN2Q8NFZ4 835 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 CNOT6LQ96LI5 555 aaKnown RBP24.56■■□□□ 1.52
PNKP-220ENST00000627232 UIMC1Q96RL1 719 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 MAP3K20Q9NYL2 800 aaKnown RBP24.56■■□□□ 1.52
PNKP-220ENST00000627232 DNM3Q9UQ16 869 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 FRMD3A2A2Y4 597 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 GOLGA6L9A6NEM1 432 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 SSBP05455 408 aaKnown RBP eCLIP24.56■■□□□ 1.52
PNKP-220ENST00000627232 CASP14P31944 242 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 SETQ01105 290 aaPredicted RBP24.56■■□□□ 1.52
PNKP-220ENST00000627232 FAM26FQ5R3K3 315 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 SCYL3Q8IZE3 742 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 SYT2Q8N9I0 419 aaPredicted RBP24.56■■□□□ 1.52
PNKP-220ENST00000627232 CYP2W1Q8TAV3 490 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 TUBGCP2Q9BSJ2 902 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 AS3MTQ9HBK9 375 aa24.56■■□□□ 1.52
PNKP-220ENST00000627232 POTEFA5A3E0 1075 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 RIOK3O14730 519 aaKnown RBP24.55■■□□□ 1.52
PNKP-220ENST00000627232 PSMD10O75832 226 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 POTEIP0CG38 1075 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 PPP2R5CQ13362 524 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 CEP55Q53EZ4 464 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 POTEGQ6S5H5 508 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 POTEEQ6S8J3 1075 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 REXO1L1PQ8IX06 675 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 MYOCDQ8IZQ8 938 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 AGBL1Q96MI9 1066 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 TSG101Q99816 390 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 SLC38A10Q9HBR0 1119 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 PPP2R2CQ9Y2T4 447 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 PPP2R3BQ9Y5P8 575 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 RPTORQ8N122 1335 aa24.55■■□□□ 1.52
PNKP-220ENST00000627232 KIF20AO95235 890 aa24.54■■□□□ 1.52
PNKP-220ENST00000627232 MUTP22033 750 aa24.54■■□□□ 1.52
PNKP-220ENST00000627232 SAMD1Q6SPF0 538 aaPredicted RBP24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms