RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 VIL1P09327 827 aaKnown RBP13.82□□□□□ -0.2
CIITA-212ENST00000618207 CXCL9Q07325 125 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 ORC2Q13416 577 aaPredicted RBP13.82□□□□□ -0.2
CIITA-212ENST00000618207 ZNF569Q5MCW4 686 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 TRMT1LQ7Z2T5 733 aaKnown RBP13.82□□□□□ -0.2
CIITA-212ENST00000618207 GMCL1P1Q8NEA9 526 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 CNKSR2Q8WXI2 1034 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 ERO1AQ96HE7 468 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 TANGO6Q9C0B7 1094 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 BCAS3Q9H6U6 928 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 PANK4Q9NVE7 773 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 ZBTB21Q9ULJ3 1066 aa13.82□□□□□ -0.2
CIITA-212ENST00000618207 PLA2G4BP0C869 781 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 GCFC2P16383 781 aaKnown RBP13.81□□□□□ -0.2
CIITA-212ENST00000618207 BAG6P46379 1132 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 COASYQ13057 564 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 HERC4Q5GLZ8 1057 aaPredicted RBP13.81□□□□□ -0.2
CIITA-212ENST00000618207 FAM151AQ8WW52 585 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 GMCL1Q96IK5 515 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 MAP7D2Q96T17 732 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 FAM207AQ9NSI2 230 aaPredicted RBP13.81□□□□□ -0.2
CIITA-212ENST00000618207 ATRNL1Q5VV63 1379 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 ITIH6Q6UXX5 1313 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 PHLPP2Q6ZVD8 1323 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 TMEM119Q4V9L6 283 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 ZNF507Q8TCN5 953 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 FEZ1Q99689 392 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 PKD2L1Q9P0L9 805 aa13.81□□□□□ -0.2
CIITA-212ENST00000618207 HERC5Q9UII4 1024 aaKnown RBP13.81□□□□□ -0.2
CIITA-212ENST00000618207 DNM2P50570 870 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 TSR1Q2NL82 804 aaKnown RBP13.8□□□□□ -0.2
CIITA-212ENST00000618207 CATSPER3Q86XQ3 398 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 MMRN2Q9H8L6 949 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 L2HGDHQ9H9P8 463 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 BMP2KQ9NSY1 1161 aaPredicted RBP13.8□□□□□ -0.2
CIITA-212ENST00000618207 RGL1Q9NZL6 768 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 CNTNAP1P78357 1384 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 TRAF5O00463 557 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 WNT10BO00744 389 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 USP11P51784 963 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 FAM26FQ5R3K3 315 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 UTP14CQ5TAP6 766 aaKnown RBP13.8□□□□□ -0.2
CIITA-212ENST00000618207 CYP26C1Q6V0L0 522 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 DNAJC19Q96DA6 116 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 GMLQ99445 158 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 KCNMB3Q9NPA1 279 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 GUCA1BQ9UMX6 200 aa13.8□□□□□ -0.2
CIITA-212ENST00000618207 NPM3O75607 178 aaKnown RBP13.79□□□□□ -0.2
CIITA-212ENST00000618207 SPDYE2Q495Y8 402 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 MIIPQ5JXC2 388 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 CENPPQ6IPU0 288 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 TMTC1Q8IUR5 882 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 CPXCR1Q8N123 301 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 OR8K1Q8NGG5 319 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 NAA15Q9BXJ9 866 aaKnown RBP13.79□□□□□ -0.2
CIITA-212ENST00000618207 ZNRF3Q9ULT6 936 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 ZNF646O15015 1829 aaPredicted RBP13.79□□□□□ -0.2
CIITA-212ENST00000618207 PVALEFA0A1B0GWK0 134 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 SFI1A8K8P3 1242 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 MSH4O15457 936 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 FBXO38Q6PIJ6 1188 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 MTERF4Q7Z6M4 381 aaKnown RBP13.79□□□□□ -0.2
CIITA-212ENST00000618207 PIGOQ8TEQ8 1089 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 ZBTB9Q96C00 473 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 NT5C3AQ9H0P0 336 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 HOMER2Q9NSB8 354 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 FZD1Q9UP38 647 aa13.79□□□□□ -0.2
CIITA-212ENST00000618207 GOLGA6L9A6NEM1 432 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 ZBTB39O15060 712 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 KIF5CO60282 957 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 AP3B2Q13367 1082 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 FAM114A1Q8IWE2 563 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 MYOCDQ8IZQ8 938 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 SMCR8Q8TEV9 937 aaPredicted RBP13.78□□□□□ -0.2
CIITA-212ENST00000618207 PSMD1Q99460 953 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 GLT8D2Q9H1C3 349 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 GOPCQ9HD26 462 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 TMX2Q9Y320 296 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 EPN1Q9Y6I3 576 aaPredicted RBP13.78□□□□□ -0.2
CIITA-212ENST00000618207 ASTN2O75129 1339 aaPredicted RBP13.78□□□□□ -0.2
CIITA-212ENST00000618207 RASSF10A6NK89 507 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 DDX39AO00148 427 aaKnown RBP13.78□□□□□ -0.2
CIITA-212ENST00000618207 EPHB6O15197 1021 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 CTTNQ14247 550 aaKnown RBP13.78□□□□□ -0.2
CIITA-212ENST00000618207 TEX35Q5T0J7 233 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 FKBP15Q5T1M5 1219 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 PRAMEF18Q5VWM3 479 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 SLC35F6Q8N357 371 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 ETNPPLQ8TBG4 499 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 UBXN4Q92575 508 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 LENG9Q96B70 501 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 CRACR2AQ9BSW2 395 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 ZNF341Q9BYN7 854 aa13.78□□□□□ -0.2
CIITA-212ENST00000618207 PUF60Q9UHX1 559 aaKnown RBP13.78□□□□□ -0.2
CIITA-212ENST00000618207 RSPH10B2B2RC85 870 aa13.77□□□□□ -0.2
CIITA-212ENST00000618207 EML1O00423 815 aa13.77□□□□□ -0.2
CIITA-212ENST00000618207 RSPH10BP0C881 870 aa13.77□□□□□ -0.2
CIITA-212ENST00000618207 CYP11B2P19099 503 aa13.77□□□□□ -0.2
CIITA-212ENST00000618207 CYP27A1Q02318 531 aa13.77□□□□□ -0.2
CIITA-212ENST00000618207 CCDC40Q4G0X9 1142 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms