RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 MCM2P49736 904 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 MRE11P49959 708 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 METAP2P50579 478 aaKnown RBP eCLIP10.11□□□□□ -0.791e-20■□□□□ 8.6
TRIM28-214ENST00000600840 CCT2P78371 535 aaKnown RBP10.11□□□□□ -0.79
TRIM28-214ENST00000600840 ITGA7Q13683 1181 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 PKN1Q16512 942 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 AAK1Q2M2I8 961 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 USH1GQ495M9 461 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 DUSP28Q4G0W2 176 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 PPP2R2DQ66LE6 453 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 PSRC1Q6PGN9 363 aaPredicted RBP10.11□□□□□ -0.79
TRIM28-214ENST00000600840 RNF207Q6ZRF8 634 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 OTOP2Q7RTS6 562 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 MICU3Q86XE3 530 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 ADGRF4Q8IZF3 695 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 CMTR1Q8N1G2 835 aaKnown RBP10.11□□□□□ -0.79
TRIM28-214ENST00000600840 TMEM199Q8N511 208 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 NECAB1Q8N987 351 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 SMARCC2Q8TAQ2 1214 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 HERVK_113Q902F9 699 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 GTF3C6Q969F1 213 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 WDR11Q9BZH6 1224 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 TRPV6Q9H1D0 765 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 CERS4Q9HA82 394 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 VTA1Q9NP79 307 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 PRRC2BQ5JSZ5 2229 aaKnown RBP10.11□□□□□ -0.79
TRIM28-214ENST00000600840 SCN5AQ14524 2016 aa10.11□□□□□ -0.79
TRIM28-214ENST00000600840 COL4A4P53420 1690 aaPredicted RBP10.1□□□□□ -0.79
TRIM28-214ENST00000600840 BAZ2BQ9UIF8 2168 aaKnown RBP10.1□□□□□ -0.79
TRIM28-214ENST00000600840 EPOPA6NHQ4 379 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 GOLGA8AA7E2F4 631 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 B4GALT4O60513 344 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 PPP1R11O60927 126 aaPredicted RBP10.1□□□□□ -0.79
TRIM28-214ENST00000600840 DTNBO60941 627 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 EDNRBP24530 442 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 KIF5BP33176 963 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 FGD1P98174 961 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 STK3Q13188 491 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 CDC37Q16543 378 aaPredicted RBP10.1□□□□□ -0.79
TRIM28-214ENST00000600840 RTN1Q16799 776 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 SYNE3Q6ZMZ3 975 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 CTCFLQ8NI51 663 aaPredicted RBP10.1□□□□□ -0.79
TRIM28-214ENST00000600840 TAAR1Q96RJ0 339 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 LZTS2Q9BRK4 669 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 AP5M1Q9H0R1 490 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 VAT1LQ9HCJ6 419 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 IL23AQ9NPF7 189 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 SH2B1Q9NRF2 756 aaPredicted RBP10.1□□□□□ -0.79
TRIM28-214ENST00000600840 RBM28Q9NW13 759 aaKnown RBP10.1□□□□□ -0.79
TRIM28-214ENST00000600840 MTCH2Q9Y6C9 303 aa10.1□□□□□ -0.79
TRIM28-214ENST00000600840 CNTNAP5Q8WYK1 1306 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 KIAA1217Q5T5P2 1943 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 SCN10AQ9Y5Y9 1956 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 OPLAHO14841 1288 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 PRPF3O43395 683 aaKnown RBP10.09□□□□□ -0.79
TRIM28-214ENST00000600840 FGBP02675 491 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 GNAQP50148 359 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 CCL23P55773 120 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 QRICH1Q2TAL8 776 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 NSUN7Q8NE18 718 aaKnown RBP10.09□□□□□ -0.79
TRIM28-214ENST00000600840 WNT8AQ9H1J5 351 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 SLKQ9H2G2 1235 aaPredicted RBP10.09□□□□□ -0.79
TRIM28-214ENST00000600840 ADD3Q9UEY8 706 aaKnown RBP10.09□□□□□ -0.79
TRIM28-214ENST00000600840 Q9Y3F1 56 aa10.09□□□□□ -0.79
TRIM28-214ENST00000600840 MROH7Q68CQ1 1323 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 REV3LO60673 3130 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 MYH7BA7E2Y1 1941 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 CCDC196A0A1B0GTZ2 297 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 K7ELQ4 463 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-214ENST00000600840 CABYRO75952 493 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 ARHGEF15O94989 841 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 MYL3P08590 195 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 CYP2C9P11712 490 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 PURAQ00577 322 aaKnown RBP10.08□□□□□ -0.8
TRIM28-214ENST00000600840 TYW1BQ6NUM6 668 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 CCDC82Q8N4S0 544 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 OR6J1Q8NGC5 347 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 SYTL5Q8TDW5 730 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-214ENST00000600840 PHKBQ93100 1093 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 SCLYQ96I15 445 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 PIGSQ96S52 555 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 LLPHQ9BRT6 129 aaKnown RBP10.08□□□□□ -0.8
TRIM28-214ENST00000600840 NOC4LQ9BVI4 516 aaKnown RBP10.08□□□□□ -0.8
TRIM28-214ENST00000600840 TRMT13Q9NUP7 481 aaKnown RBP10.08□□□□□ -0.8
TRIM28-214ENST00000600840 V9GY48 417 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-214ENST00000600840 MUC6Q6W4X9 2439 aa10.08□□□□□ -0.8
TRIM28-214ENST00000600840 TRIP12Q14669 1992 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-214ENST00000600840 PNMA6FA0A0J9YX94 578 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 hCG_1642624A0A1W2PR95 340 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 PI4K2BG5E9Z4 385 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 ZBTB5O15062 677 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 TLR3O15455 904 aaKnown RBP10.07□□□□□ -0.8
TRIM28-214ENST00000600840 JAK2O60674 1132 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 GHRHRQ02643 423 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 PDE4DQ08499 809 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 LY6KQ17RY6 165 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 NBPF20Q3BBV1 942 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 CCDC62Q6P9F0 684 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 SPRED2Q7Z698 418 aa10.07□□□□□ -0.8
TRIM28-214ENST00000600840 CCDC83Q8IWF9 413 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms