RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CAPN11Q9UMQ6 739 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 ZNF280AP59817 542 aaPredicted RBP21.94■■□□□ 1.1
CLIP3-206ENST00000593074 LRRC63Q05C16 580 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 FAM83BQ5T0W9 1011 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 TTYH3Q9C0H2 523 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 SH2D4AQ9H788 454 aa21.94■■□□□ 1.1
CLIP3-206ENST00000593074 ABCB11O95342 1321 aa21.93■■□□□ 1.1
CLIP3-206ENST00000593074 IDEP14735 1019 aa21.93■■□□□ 1.1
CLIP3-206ENST00000593074 CIITAP33076 1130 aa21.93■■□□□ 1.1
CLIP3-206ENST00000593074 CHURC1Q8WUH1 139 aa21.93■■□□□ 1.1
CLIP3-206ENST00000593074 PES1O00541 588 aaKnown RBP21.92■■□□□ 1.1
CLIP3-206ENST00000593074 CASQ1P31415 396 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 COASYQ13057 564 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 RASA3Q14644 834 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 PRR16Q569H4 304 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 RETREG2Q8NC44 543 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 EEF2KMTQ96G04 330 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 VCPKMTQ9H867 229 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 POTEB3A0JP26 581 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 POTECB2RU33 542 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 MTIF2P46199 727 aaKnown RBP21.92■■□□□ 1.1
CLIP3-206ENST00000593074 HAUS3Q68CZ6 603 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 POTEBQ6S5H4 581 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 OR8K1Q8NGG5 319 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 ERGIC2Q96RQ1 377 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 CGNQ9P2M7 1197 aaKnown RBP21.92■■□□□ 1.1
CLIP3-206ENST00000593074 KIAA1024Q9UPX6 916 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 LUC7L2Q9Y383 392 aaKnown RBP21.92■■□□□ 1.1
CLIP3-206ENST00000593074 FER1L6Q2WGJ9 1857 aa21.92■■□□□ 1.1
CLIP3-206ENST00000593074 FAM86B1E9PN63 330 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 URI1O94763 535 aaPredicted RBP21.91■■□□□ 1.1
CLIP3-206ENST00000593074 ASNSP08243 561 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 CYP3A4P08684 503 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 FAM86B2P0C5J1 330 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 TAL1P17542 331 aaPredicted RBP21.91■■□□□ 1.1
CLIP3-206ENST00000593074 TNFAIP1Q13829 316 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 FAM20AQ96MK3 541 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 NOC4LQ9BVI4 516 aaKnown RBP21.91■■□□□ 1.1
CLIP3-206ENST00000593074 NUP58Q9BVL2 599 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 LTBP3Q9NS15 1303 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 FGFR1OPO95684 399 aaKnown RBP21.91■■□□□ 1.1
CLIP3-206ENST00000593074 PLA2G4BP0C869 781 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 STAT3P40763 770 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 TBC1D8BQ0IIM8 1120 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 ELF2Q15723 593 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 LRRC55Q6ZSA7 311 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 LRRN4CLQ8ND94 238 aa21.91■■□□□ 1.1
CLIP3-206ENST00000593074 BMP2KQ9NSY1 1161 aaPredicted RBP21.91■■□□□ 1.1
CLIP3-206ENST00000593074 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.91■■□□□ 1.1
CLIP3-206ENST00000593074 V9GYY5 206 aaPredicted RBP21.91■■□□□ 1.1
CLIP3-206ENST00000593074 E9PMD0 336 aa21.9■■□□□ 1.1
CLIP3-206ENST00000593074 MED24O75448 989 aa21.9■■□□□ 1.1
CLIP3-206ENST00000593074 SGIP1Q9BQI5 828 aa21.9■■□□□ 1.1
CLIP3-206ENST00000593074 CCDC94Q9BW85 323 aaPredicted RBP21.9■■□□□ 1.1
CLIP3-206ENST00000593074 LZTFL1Q9NQ48 299 aa21.9■■□□□ 1.1
CLIP3-206ENST00000593074 PANK4Q9NVE7 773 aa21.9■■□□□ 1.1
CLIP3-206ENST00000593074 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.9■■□□□ 1.1
CLIP3-206ENST00000593074 RASSF10A6NK89 507 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 PLA2G6O60733 806 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 ZYXQ15942 572 aaKnown RBP21.89■■□□□ 1.1
CLIP3-206ENST00000593074 MEA1Q16626 185 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 ZCWPW2Q504Y3 356 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 FIGNQ5HY92 759 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 FAM26FQ5R3K3 315 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 MYOCDQ8IZQ8 938 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 GLIS3Q8NEA6 775 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 ACRBPQ8NEB7 543 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 UIMC1Q96RL1 719 aa21.89■■□□□ 1.1
CLIP3-206ENST00000593074 A0A0U1RQJ8 604 aa21.89■■□□□ 1.09
CLIP3-206ENST00000593074 CYP11B2P19099 503 aa21.89■■□□□ 1.09
CLIP3-206ENST00000593074 HOXA13P31271 388 aaPredicted RBP21.89■■□□□ 1.09
CLIP3-206ENST00000593074 GMPSP49915 693 aaPredicted RBP21.89■■□□□ 1.09
CLIP3-206ENST00000593074 MAP3K9P80192 1104 aa21.89■■□□□ 1.09
CLIP3-206ENST00000593074 FAM160B2Q86V87 743 aa21.89■■□□□ 1.09
CLIP3-206ENST00000593074 ATRIPQ8WXE1 791 aa21.89■■□□□ 1.09
CLIP3-206ENST00000593074 RANBP17Q9H2T7 1088 aaKnown RBP21.89■■□□□ 1.09
CLIP3-206ENST00000593074 SCAF8Q9UPN6 1271 aaKnown RBP21.89■■□□□ 1.09
CLIP3-206ENST00000593074 STK24Q9Y6E0 443 aa21.89■■□□□ 1.09
CLIP3-206ENST00000593074 PITPNM2Q9BZ72 1349 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 FRMD3A2A2Y4 597 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 NKRFO15226 690 aaKnown RBP eCLIP21.88■■□□□ 1.09
CLIP3-206ENST00000593074 EGFRP00533 1210 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 RPA1P27694 616 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 SLC12A3P55017 1021 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 GPBP1Q86WP2 473 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 CCDC65Q8IXS2 484 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 ERMNQ8TAM6 284 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 IQCDQ96DY2 449 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 PCDHA2Q9Y5H9 948 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 MRFAP1Q9Y605 127 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 GJA3Q9Y6H8 435 aa21.88■■□□□ 1.09
CLIP3-206ENST00000593074 A0A1W2PQJ5 194 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 POTEFA5A3E0 1075 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 PHF20L1A8MW92 1017 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 KIF5CO60282 957 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 SSBP05455 408 aaKnown RBP eCLIP21.87■■□□□ 1.09
CLIP3-206ENST00000593074 POTEIP0CG38 1075 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 TRIM21P19474 475 aaKnown RBP21.87■■□□□ 1.09
CLIP3-206ENST00000593074 RASSF7Q02833 373 aa21.87■■□□□ 1.09
CLIP3-206ENST00000593074 FKBP15Q5T1M5 1219 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms