RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZC3H14Q6PJT7 736 aaKnown RBP19.39■□□□□ 0.69
VPS53-218ENST00000575207 VN1R2Q8NFZ6 395 aa19.39■□□□□ 0.69
VPS53-218ENST00000575207 AFG1LQ8WV93 481 aa19.39■□□□□ 0.69
VPS53-218ENST00000575207 MKL1Q969V6 931 aa19.39■□□□□ 0.69
VPS53-218ENST00000575207 RTKNQ9BST9 563 aa19.39■□□□□ 0.69
VPS53-218ENST00000575207 TLE6Q9H808 572 aa19.39■□□□□ 0.69
VPS53-218ENST00000575207 SYNPO2Q9UMS6 1093 aa19.39■□□□□ 0.69
VPS53-218ENST00000575207 FRYQ5TBA9 3013 aa19.38■□□□□ 0.69
VPS53-218ENST00000575207 FSD2A1L4K1 749 aa19.38■□□□□ 0.69
VPS53-218ENST00000575207 PDE6AP16499 860 aa19.38■□□□□ 0.69
VPS53-218ENST00000575207 CASTP20810 708 aaKnown RBP19.38■□□□□ 0.69
VPS53-218ENST00000575207 RBM10P98175 930 aaKnown RBP19.38■□□□□ 0.69
VPS53-218ENST00000575207 TMEM184AQ6ZMB5 413 aa19.38■□□□□ 0.69
VPS53-218ENST00000575207 FANCMQ8IYD8 2048 aa19.38■□□□□ 0.69
VPS53-218ENST00000575207 GPR161Q8N6U8 529 aaKnown RBP19.38■□□□□ 0.69
VPS53-218ENST00000575207 SUMF1Q8NBK3 374 aa19.38■□□□□ 0.69
VPS53-218ENST00000575207 ZNF689Q96CS4 500 aaPredicted RBP19.38■□□□□ 0.69
VPS53-218ENST00000575207 CLIP2Q9UDT6 1046 aa19.38■□□□□ 0.69
VPS53-218ENST00000575207 DCDC2BA2VCK2 349 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 PRR5-ARHGAP8B1AHC4 643 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 BMP3P12645 472 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 THPOP40225 353 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 ARHGAP8P85298 464 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 ZNF200P98182 395 aaPredicted RBP19.37■□□□□ 0.69
VPS53-218ENST00000575207 SLC9C2Q5TAH2 1124 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 GMCL1P1Q8NEA9 526 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 POF1BQ8WVV4 589 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 APBB2Q92870 758 aa19.37■□□□□ 0.69
VPS53-218ENST00000575207 BAZ2AQ9UIF9 1905 aaKnown RBP19.36■□□□□ 0.69
VPS53-218ENST00000575207 C2CD4DB7Z1M9 353 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 HAS3O00219 553 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 PRKAB2O43741 272 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 ARIH2O95376 493 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 GNAI3P08754 354 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 EDNRBP24530 442 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 PSEN2P49810 448 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 STAT2P52630 851 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 DMWDQ09019 674 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 BAATQ14032 418 aaPredicted RBP19.36■□□□□ 0.69
VPS53-218ENST00000575207 COL9A3Q14050 684 aaPredicted RBP19.36■□□□□ 0.69
VPS53-218ENST00000575207 BTG3Q14201 252 aaPredicted RBP19.36■□□□□ 0.69
VPS53-218ENST00000575207 SERINC5Q86VE9 423 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 AMOTL1Q8IY63 956 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 CDCA3Q99618 268 aaPredicted RBP19.36■□□□□ 0.69
VPS53-218ENST00000575207 KATNAL1Q9BW62 490 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 OSBPL7Q9BZF2 842 aa19.36■□□□□ 0.69
VPS53-218ENST00000575207 TLR7Q9NYK1 1049 aaKnown RBP19.36■□□□□ 0.69
VPS53-218ENST00000575207 CDV3Q9UKY7 258 aaKnown RBP19.36■□□□□ 0.69
VPS53-218ENST00000575207 MAST4O15021 2626 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 PNMA6EA0A0J9YXQ4 647 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 TCRBV5S4A2TA0A5A2 114 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 TMEM232C9JQI7 657 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 SYCE2Q6PIF2 218 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 FAM160B2Q86V87 743 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 CHURC1Q8WUH1 139 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 ASH1LQ9NR48 2969 aaKnown RBP19.35■□□□□ 0.69
VPS53-218ENST00000575207 TSHZ2Q9NRE2 1034 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 CEP295Q9C0D2 2601 aa19.35■□□□□ 0.69
VPS53-218ENST00000575207 ZNF532Q9HCE3 1301 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 IGKV6D-41A0A0C4DH26 115 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 SOBPA7XYQ1 873 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 PER2O15055 1255 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 PDE4DQ08499 809 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 KCNC3Q14003 757 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 HIC1Q14526 733 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 DUSP6Q16828 381 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 ANKRD54Q6NXT1 300 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 CCDC62Q6P9F0 684 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 CRIPAKQ8N1N5 446 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 KLHL23Q8NBE8 558 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 ALG1Q9BT22 464 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 ARMT1Q9H993 441 aa19.34■□□□□ 0.69
VPS53-218ENST00000575207 F2P00734 622 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 ASGR2P07307 311 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 RASA1P20936 1047 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 ARHGAP1Q07960 439 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 MFSD10Q14728 455 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 DGKDQ16760 1214 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 KIAA0753Q2KHM9 967 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 ALDH1L2Q3SY69 923 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 CCDC184Q52MB2 194 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 STAG1Q8WVM7 1258 aa19.33■□□□□ 0.68
VPS53-218ENST00000575207 GCN1Q92616 2671 aaKnown RBP19.33■□□□□ 0.68
VPS53-218ENST00000575207 PLA2G6O60733 806 aa19.32■□□□□ 0.68
VPS53-218ENST00000575207 LMNB2Q03252 620 aa19.32■□□□□ 0.68
VPS53-218ENST00000575207 SLFN13Q68D06 897 aa19.32■□□□□ 0.68
VPS53-218ENST00000575207 ZBED9Q6R2W3 1325 aa19.31■□□□□ 0.68
VPS53-218ENST00000575207 CAND2O75155 1236 aa19.31■□□□□ 0.68
VPS53-218ENST00000575207 GH1P01241 217 aa19.31■□□□□ 0.68
VPS53-218ENST00000575207 SRGAP2BP0DMP2 458 aa19.31■□□□□ 0.68
VPS53-218ENST00000575207 HOXB8P17481 243 aaPredicted RBP19.31■□□□□ 0.68
VPS53-218ENST00000575207 TTF1Q15361 905 aaPredicted RBP19.31■□□□□ 0.68
VPS53-218ENST00000575207 CTR9Q6PD62 1173 aa19.31■□□□□ 0.68
VPS53-218ENST00000575207 ZDHHC14Q8IZN3 488 aa19.31■□□□□ 0.68
VPS53-218ENST00000575207 MPHOSPH6Q99547 160 aaKnown RBP19.31■□□□□ 0.68
VPS53-218ENST00000575207 CCDC8Q9H0W5 538 aaPredicted RBP19.31■□□□□ 0.68
VPS53-218ENST00000575207 MRPL42Q9Y6G3 142 aaKnown RBP19.31■□□□□ 0.68
VPS53-218ENST00000575207 MYH4Q9Y623 1939 aa19.31■□□□□ 0.68
VPS53-218ENST00000575207 DGKIO75912 1065 aa19.3■□□□□ 0.68
VPS53-218ENST00000575207 SP9P0CG40 484 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms