RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 CCDC88AQ3V6T2 1871 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 ZNF185O15231 689 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 ZRANB2O95218 330 aaKnown RBP eCLIP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 NPR1P16066 1061 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 HOXA13P31271 388 aaPredicted RBP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 NAP1L1P55209 391 aaKnown RBP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 TERF2Q15554 542 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 LONRF2Q1L5Z9 754 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 CCDC40Q4G0X9 1142 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 HERC4Q5GLZ8 1057 aaPredicted RBP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 UTP14CQ5TAP6 766 aaKnown RBP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 UNC13DQ70J99 1090 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 ANKRD13AQ8IZ07 590 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 CAGE1Q8TC20 777 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 NDST4Q9H3R1 872 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 A0A1W2PQC6 194 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 CYLC1P35663 651 aaPredicted RBP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 CYP4A11Q02928 519 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 ZYXQ15942 572 aaKnown RBP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 CDC37Q16543 378 aaPredicted RBP9.72□□□□□ -0.85
LINC00558-201ENST00000569422 CACNA2D4Q7Z3S7 1137 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 DNAJC7Q99615 494 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 ANKZF1Q9H8Y5 726 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 PANK4Q9NVE7 773 aa9.72□□□□□ -0.85
LINC00558-201ENST00000569422 ALDH1B1P30837 517 aa9.71□□□□□ -0.85
LINC00558-201ENST00000569422 MATR3P43243 847 aaKnown RBP eCLIP9.71□□□□□ -0.85
LINC00558-201ENST00000569422 ICA1Q05084 483 aa9.71□□□□□ -0.85
LINC00558-201ENST00000569422 AOC3Q16853 763 aa9.71□□□□□ -0.85
LINC00558-201ENST00000569422 VWA3BQ502W6 1294 aa9.71□□□□□ -0.85
LINC00558-201ENST00000569422 TDRD12Q587J7 1177 aaKnown RBP9.71□□□□□ -0.85
LINC00558-201ENST00000569422 NLGN1Q8N2Q7 840 aa9.71□□□□□ -0.85
LINC00558-201ENST00000569422 BMP2KQ9NSY1 1161 aaPredicted RBP9.71□□□□□ -0.85
LINC00558-201ENST00000569422 SWAP70Q9UH65 585 aa9.71□□□□□ -0.85
LINC00558-201ENST00000569422 IGKV6D-41A0A0C4DH26 115 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 ESYT2A0FGR8 921 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 POTEFA5A3E0 1075 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 KRT86O43790 486 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 AKR1B10O60218 316 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 PHACTR2O75167 634 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 POTEIP0CG38 1075 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 SNHG28P0DPA3 235 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 OAS2P29728 719 aaKnown RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 NT5C2P49902 561 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 FXR2P51116 673 aaKnown RBP eCLIP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 UBXN2AP68543 259 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 KRT83P78385 493 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 SMC1AQ14683 1233 aaKnown RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 SPA17Q15506 151 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 GPATCH4Q5T3I0 446 aaKnown RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 POTEGQ6S5H5 508 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 POTEEQ6S8J3 1075 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 GPBP1Q86WP2 473 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 ZNF513Q8N8E2 541 aaPredicted RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 NOC3LQ8WTT2 800 aaKnown RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 MAGEF1Q9HAY2 307 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 SCAF8Q9UPN6 1271 aaKnown RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 STK24Q9Y6E0 443 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 CASZ1Q86V15 1759 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 SMARCA1P28370 1054 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 CXCR5P32302 372 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 VSNL1P62760 191 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 ZBED6P86452 979 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 COASYQ13057 564 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 CENPPQ6IPU0 288 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 TRMT1LQ7Z2T5 733 aaKnown RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 HAUS4Q9H6D7 363 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 MLXIPQ9HAP2 919 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 ABCB6Q9NP58 842 aa9.71□□□□□ -0.86
LINC00558-201ENST00000569422 GEMIN8Q9NWZ8 242 aaKnown RBP9.71□□□□□ -0.86
LINC00558-201ENST00000569422 LAMB1P07942 1786 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 CLRN2A0PK11 232 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 LRRC53A6NM62 1247 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 F5H6K3 240 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 KLRC3Q07444 240 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 KIF5AQ12840 1032 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 PABPC4Q13310 644 aaKnown RBP eCLIP9.7□□□□□ -0.86
LINC00558-201ENST00000569422 FAM26FQ5R3K3 315 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 SH3BP5LQ7L8J4 393 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 MYOCDQ8IZQ8 938 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 MMS19Q96T76 1030 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 TSG101Q99816 390 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 PLEKHA4Q9H4M7 779 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 BCAS3Q9H6U6 928 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 YY1AP1Q9H869 796 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.7□□□□□ -0.86
LINC00558-201ENST00000569422 STK17AQ9UEE5 414 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 TCP10L2B9ZVM9 353 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 ECE2O60344 883 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 ONECUT3O60422 494 aaPredicted RBP9.7□□□□□ -0.86
LINC00558-201ENST00000569422 GH2P01242 217 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 PDE6BP35913 854 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 EIF4A3P38919 411 aaKnown RBP9.7□□□□□ -0.86
LINC00558-201ENST00000569422 PSMC6P62333 389 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 GABPB1Q06547 395 aaPredicted RBP9.7□□□□□ -0.86
LINC00558-201ENST00000569422 CYP2W1Q8TAV3 490 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 MASTLQ96GX5 879 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 NUP58Q9BVL2 599 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 ANO3Q9BYT9 981 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 FAM198AQ9UFP1 575 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 SAR1BQ9Y6B6 198 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms