RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 UNCXA6NJT0 531 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 ARNTLO00327 626 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 CYP1A1P04798 512 aaPredicted RBP7.57□□□□□ -1.2
VPS13C-208ENST00000559119 LSAMPQ13449 338 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 FXNQ16595 210 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 CR1LQ2VPA4 569 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 PRR31Q5SQ13 230 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 STEAP3Q658P3 488 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 TOE1Q96GM8 510 aaKnown RBP7.57□□□□□ -1.2
VPS13C-208ENST00000559119 PCDHB4Q9Y5E5 795 aa7.57□□□□□ -1.2
VPS13C-208ENST00000559119 TESK1Q15569 626 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 SF1Q15637 639 aaKnown RBP7.56□□□□□ -1.2
VPS13C-208ENST00000559119 CPZQ66K79 652 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 GLB1LQ6UWU2 654 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 TTC9BQ8N6N2 239 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 CHST13Q8NET6 341 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 C8orf49Q96NF6 230 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 CLDND1Q9NY35 253 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 DTLQ9NZJ0 730 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 PRKAG3Q9UGI9 489 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 FBXL7Q9UJT9 491 aa7.56□□□□□ -1.2
VPS13C-208ENST00000559119 C9orf118A6NHY6 69 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 CYP7B1O75881 506 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 DGKIO75912 1065 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 LCP1P13796 627 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 GFRA1P56159 465 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 ADAM9Q13443 819 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 GNL2Q13823 731 aaKnown RBP7.55□□□□□ -1.2
VPS13C-208ENST00000559119 SURF1Q15526 300 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 ARRDC4Q8NCT1 418 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 ZSWIM3Q96MP5 696 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 CLIC6Q96NY7 704 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 L2HGDHQ9H9P8 463 aa7.55□□□□□ -1.2
VPS13C-208ENST00000559119 TCRBV5S2A0A599 114 aa7.54□□□□□ -1.2
VPS13C-208ENST00000559119 AGRPO00253 132 aa7.54□□□□□ -1.2
VPS13C-208ENST00000559119 ERCC5P28715 1186 aaPredicted RBP7.54□□□□□ -1.2
VPS13C-208ENST00000559119 PLEKHH3Q7Z736 793 aa7.54□□□□□ -1.2
VPS13C-208ENST00000559119 TMEM145Q8NBT3 493 aa7.54□□□□□ -1.2
VPS13C-208ENST00000559119 EPB41L1Q9H4G0 881 aa7.54□□□□□ -1.2
VPS13C-208ENST00000559119 TADA3O75528 432 aa7.53□□□□□ -1.2
VPS13C-208ENST00000559119 ZNF28P17035 718 aa7.53□□□□□ -1.2
VPS13C-208ENST00000559119 ETFBP38117 255 aa7.53□□□□□ -1.2
VPS13C-208ENST00000559119 EMC4Q5J8M3 183 aa7.53□□□□□ -1.2
VPS13C-208ENST00000559119 MRM1Q6IN84 353 aaKnown RBP7.53□□□□□ -1.2
VPS13C-208ENST00000559119 EEPD1Q7L9B9 569 aa7.53□□□□□ -1.2
VPS13C-208ENST00000559119 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13C-208ENST00000559119 TMEM168Q9H0V1 697 aa7.53□□□□□ -1.2
VPS13C-208ENST00000559119 LAMTOR5O43504 91 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 MAFKO60675 156 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 ZNF20P17024 532 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 IL13P35225 146 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 DENND5AQ6IQ26 1287 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 TEPPQ6URK8 271 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 LIMS2Q7Z4I7 341 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 MICAL1Q8TDZ2 1067 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS13C-208ENST00000559119 WRNIP1Q96S55 665 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 TMEM209Q96SK2 561 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 EPN3Q9H201 632 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 MYOTQ9UBF9 498 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 CROTQ9UKG9 612 aa7.52□□□□□ -1.21
VPS13C-208ENST00000559119 B4GALT3O60512 393 aa7.51□□□□□ -1.21
VPS13C-208ENST00000559119 PHOSPHO1Q8TCT1 267 aa7.51□□□□□ -1.21
VPS13C-208ENST00000559119 KCTD13Q8WZ19 329 aa7.51□□□□□ -1.21
VPS13C-208ENST00000559119 C1QTNF3Q9BXJ4 246 aa7.51□□□□□ -1.21
VPS13C-208ENST00000559119 KRIT1O00522 736 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 LRG1P02750 347 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 TNFRSF1AP19438 455 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 SLC35F1Q5T1Q4 408 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 DVL3Q92997 716 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-208ENST00000559119 C1orf159Q96HA4 380 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 YTHDC1Q96MU7 727 aaKnown RBP7.5□□□□□ -1.21
VPS13C-208ENST00000559119 KRTAP3-1Q9BYR8 98 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 SMOC1Q9H4F8 434 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 FTSJ1Q9UET6 329 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 ST6GALNAC2Q9UJ37 374 aa7.5□□□□□ -1.21
VPS13C-208ENST00000559119 R3HCC1Q9Y3T6 440 aaKnown RBP7.5□□□□□ -1.21
VPS13C-208ENST00000559119 C1QTNF3-AMACRE9PGA6 284 aa7.49□□□□□ -1.21
VPS13C-208ENST00000559119 GJB6O95452 261 aa7.49□□□□□ -1.21
VPS13C-208ENST00000559119 MLLT6P55198 1093 aaPredicted RBP7.49□□□□□ -1.21
VPS13C-208ENST00000559119 ZXDAP98168 799 aa7.49□□□□□ -1.21
VPS13C-208ENST00000559119 TMC5Q6UXY8 1006 aa7.49□□□□□ -1.21
VPS13C-208ENST00000559119 TRIM48Q8IWZ4 208 aa7.49□□□□□ -1.21
VPS13C-208ENST00000559119 SSBP3Q9BWW4 388 aaPredicted RBP7.49□□□□□ -1.21
VPS13C-208ENST00000559119 NPFFR2Q9Y5X5 522 aa7.49□□□□□ -1.21
VPS13C-208ENST00000559119 NPEPPSL1A6NEC2 478 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 MATN3O15232 486 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 GRIA2P42262 883 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 PPP2R2AP63151 447 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 MAP4K2Q12851 820 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 SLC10A6Q3KNW5 377 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 TRMT10BQ6PF06 316 aaKnown RBP7.48□□□□□ -1.21
VPS13C-208ENST00000559119 ZNF408Q9H9D4 720 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 JADE2Q9NQC1 790 aa7.48□□□□□ -1.21
VPS13C-208ENST00000559119 CYP4F22Q6NT55 531 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 ARHGEF18Q6ZSZ5 1173 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 HOMEZQ8IX15 550 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 KBTBD2Q8IY47 623 aa7.47□□□□□ -1.21
VPS13C-208ENST00000559119 ZCCHC14Q8WYQ9 949 aaKnown RBP7.47□□□□□ -1.21
VPS13C-208ENST00000559119 KISS1RQ969F8 398 aaPredicted RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms