RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 ARMCX5Q6P1M9 558 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 UNC13DQ70J99 1090 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 OTOP1Q7RTM1 612 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 NIPA1Q7RTP0 329 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 CATSPER3Q86XQ3 398 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 LRRC8AQ8IWT6 810 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 SMAP1Q8IYB5 467 aaPredicted RBP9.99□□□□□ -0.81
TDP1-210ENST00000554976 IL31RAQ8NI17 732 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 RAB34Q9BZG1 259 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 MAF1Q9H063 256 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 LIMA1Q9UHB6 759 aaKnown RBP9.99□□□□□ -0.81
TDP1-210ENST00000554976 CCPG1Q9ULG6 757 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 UBIAD1Q9Y5Z9 338 aa9.99□□□□□ -0.81
TDP1-210ENST00000554976 PVALEFA0A1B0GWK0 134 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 EML1O00423 815 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 CFBP00751 764 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 PLCB2Q00722 1185 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 ARSHQ5FYA8 562 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 FOXR2Q6PJQ5 311 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 SYTL5Q8TDW5 730 aaPredicted RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 ATG4CQ96DT6 458 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 DUSP9Q99956 384 aaKnown RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 POLR3CQ9BUI4 534 aaPredicted RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 TMX1Q9H3N1 280 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 RAVER2Q9HCJ3 691 aaKnown RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 RIPK3Q9Y572 518 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 DHX15O43143 795 aaKnown RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 ITGB5P18084 799 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 RPA1P27694 616 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 LRMPQ12912 555 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 STK4Q13043 487 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 KRT79Q5XKE5 535 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 PCNX4Q63HM2 1172 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 SLC30A10Q6XR72 485 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 USP50Q70EL3 339 aaPredicted RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 ILDR2Q71H61 639 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 IPO4Q8TEX9 1081 aaKnown RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 HSD17B14Q9BPX1 270 aa9.98□□□□□ -0.81
TDP1-210ENST00000554976 ADD3Q9UEY8 706 aaKnown RBP9.98□□□□□ -0.81
TDP1-210ENST00000554976 MYH11P35749 1972 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 POTEB3A0JP26 581 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 FCER1AP12319 257 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 HOXA7P31268 230 aaPredicted RBP9.97□□□□□ -0.81
TDP1-210ENST00000554976 MRPS9P82933 396 aaKnown RBP9.97□□□□□ -0.81
TDP1-210ENST00000554976 PAK1Q13153 545 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 SUPT20HL1Q3ZLR7 823 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 POTEBQ6S5H4 581 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 SV2BQ7L1I2 683 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 TMEM139Q8IV31 216 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 KCTD17Q8N5Z5 321 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 NELFBQ8WX92 580 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 MXRA8Q9BRK3 442 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 NT5C3AQ9H0P0 336 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 RABGAP1Q9Y3P9 1069 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 ZHX2Q9Y6X8 837 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 GOLGA6L6A8MZA4 724 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 E9PMD0 336 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 FLOT1O75955 427 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 HMGCS2P54868 508 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 TPM4P67936 248 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 SETQ01105 290 aaPredicted RBP9.97□□□□□ -0.81
TDP1-210ENST00000554976 TMEM132BQ14DG7 1078 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 CEP55Q53EZ4 464 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 MAP7D2Q96T17 732 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 TANGO6Q9C0B7 1094 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 PICK1Q9NRD5 415 aa9.97□□□□□ -0.81
TDP1-210ENST00000554976 TRIM49BA6NDI0 452 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 SPDYE16A6NNV3 312 aaPredicted RBP9.96□□□□□ -0.81
TDP1-210ENST00000554976 ARP10275 920 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 CYP11B2P19099 503 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 PSMC6P62333 389 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 MAP3K9P80192 1104 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 PGM5Q15124 567 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 MCF2L2Q86YR7 1114 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 ZC3H3Q8IXZ2 948 aaKnown RBP9.96□□□□□ -0.81
TDP1-210ENST00000554976 ZC3H15Q8WU90 426 aaKnown RBP9.96□□□□□ -0.81
TDP1-210ENST00000554976 DDX12PQ92771 950 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 DHTKD1Q96HY7 919 aaPredicted RBP9.96□□□□□ -0.81
TDP1-210ENST00000554976 WRAP73Q9P2S5 460 aaPredicted RBP9.96□□□□□ -0.81
TDP1-210ENST00000554976 PNMA2Q9UL42 364 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 STK24Q9Y6E0 443 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 PLXNB2O15031 1838 aa9.96□□□□□ -0.81
TDP1-210ENST00000554976 A0A0G2JLL6 359 aaPredicted RBP9.96□□□□□ -0.82
TDP1-210ENST00000554976 COBLO75128 1261 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 CCT6AP40227 531 aaKnown RBP9.96□□□□□ -0.82
TDP1-210ENST00000554976 STX17P56962 302 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 UBASH3AP57075 661 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 ZCWPW2Q504Y3 356 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 CENPPQ6IPU0 288 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 LBX2Q6XYB7 198 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 PRRT2Q7Z6L0 340 aaPredicted RBP9.96□□□□□ -0.82
TDP1-210ENST00000554976 FCHSD1Q86WN1 690 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 GTPBP4Q9BZE4 634 aaKnown RBP9.96□□□□□ -0.82
TDP1-210ENST00000554976 SEMA6BQ9H3T3 888 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 PLXNA1Q9UIW2 1896 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 POTEFA5A3E0 1075 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 IRF6O14896 467 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 CBFA2T2O43439 604 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 SLITRK3O94933 977 aa9.96□□□□□ -0.82
TDP1-210ENST00000554976 PTMAP06454 111 aaKnown RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms