RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 CXCL10P02778 98 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 ZNF286BP0CG31 522 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 SNHG28P0DPA3 235 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 CKBP12277 381 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 HSPA4P34932 840 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 RBL2Q08999 1139 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 TBC1D10CQ8IV04 446 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 TBC1D5Q92609 795 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 WNT8BQ93098 351 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 RRAGDQ9NQL2 400 aaPredicted RBP13.22□□□□□ -0.29
VPS33B-204ENST00000554660 TCP11L1Q9NUJ3 509 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 HDAC6Q9UBN7 1215 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 GTF2IRD1Q9UHL9 959 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 ARIH1Q9Y4X5 557 aaPredicted RBP13.22□□□□□ -0.29
VPS33B-204ENST00000554660 B4DLN1 442 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 GPR37L1O60883 481 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 KCNA5P22460 613 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 MRPL12P52815 198 aaKnown RBP13.21□□□□□ -0.29
VPS33B-204ENST00000554660 ERVK-21P61565 698 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 ALX1Q15699 326 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 CDC37Q16543 378 aaPredicted RBP13.21□□□□□ -0.29
VPS33B-204ENST00000554660 ZNF589Q86UQ0 364 aaPredicted RBP13.21□□□□□ -0.29
VPS33B-204ENST00000554660 TRIM44Q96DX7 344 aaPredicted RBP13.21□□□□□ -0.29
VPS33B-204ENST00000554660 TMX3Q96JJ7 454 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 TAAR1Q96RJ0 339 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 TGS1Q96RS0 853 aaKnown RBP13.21□□□□□ -0.29
VPS33B-204ENST00000554660 RAD9AQ99638 391 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 ZKSCAN3Q9BRR0 538 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 C17orf80Q9BSJ5 609 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 ALG1Q9BT22 464 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 PANK2Q9BZ23 570 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 UBA5Q9GZZ9 404 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 PNMA2Q9UL42 364 aa13.21□□□□□ -0.29
VPS33B-204ENST00000554660 NEDD4P46934 1319 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 ESPNB1AK53 854 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 PI4K2BG5E9Z4 385 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 IL9P15248 144 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 EIF2AK2P19525 551 aaKnown RBP13.2□□□□□ -0.3
VPS33B-204ENST00000554660 CASTP20810 708 aaKnown RBP13.2□□□□□ -0.3
VPS33B-204ENST00000554660 PSEN2P49810 448 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 NEK4P51957 841 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 ZNF200P98182 395 aaPredicted RBP13.2□□□□□ -0.3
VPS33B-204ENST00000554660 MBTPS1Q14703 1052 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 ZNF618Q5T7W0 954 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 TRAF7Q6Q0C0 670 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 GAS2L3Q86XJ1 694 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 C7orf31Q8N865 590 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.2□□□□□ -0.3
VPS33B-204ENST00000554660 SYTL5Q8TDW5 730 aaPredicted RBP13.2□□□□□ -0.3
VPS33B-204ENST00000554660 LMCD1Q9NZU5 365 aa13.2□□□□□ -0.3
VPS33B-204ENST00000554660 BRWD1Q9NSI6 2320 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 ZMYM6O95789 1325 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 ABHD14A-ACY1A0A1B0GW23 586 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 SORBS3O60504 671 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 F2P00734 622 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 HSPD1P10809 573 aaKnown RBP13.19□□□□□ -0.3
VPS33B-204ENST00000554660 SSTR3P32745 418 aaPredicted RBP13.19□□□□□ -0.3
VPS33B-204ENST00000554660 NASPP49321 788 aaPredicted RBP13.19□□□□□ -0.3
VPS33B-204ENST00000554660 MFSD10Q14728 455 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 DGKDQ16760 1214 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 KIAA0753Q2KHM9 967 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 TRIM71Q2Q1W2 868 aaKnown RBP13.19□□□□□ -0.3
VPS33B-204ENST00000554660 GPATCH4Q5T3I0 446 aaKnown RBP13.19□□□□□ -0.3
VPS33B-204ENST00000554660 MCTP1Q6DN14 999 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.19□□□□□ -0.3
VPS33B-204ENST00000554660 FAM178BQ8IXR5 827 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 GJD3Q8N144 294 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 RUFY2Q8WXA3 655 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 SYAP1Q96A49 352 aaPredicted RBP13.19□□□□□ -0.3
VPS33B-204ENST00000554660 EVI5LQ96CN4 794 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 RMDN3Q96TC7 470 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 HELLSQ9NRZ9 838 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 KIAA1217Q5T5P2 1943 aa13.19□□□□□ -0.3
VPS33B-204ENST00000554660 ABCB11O95342 1321 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.18□□□□□ -0.3
VPS33B-204ENST00000554660 SGSM2O43147 1006 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 PARNO95453 639 aaKnown RBP13.18□□□□□ -0.3
VPS33B-204ENST00000554660 NMIQ13287 307 aaPredicted RBP13.18□□□□□ -0.3
VPS33B-204ENST00000554660 PTK7Q13308 1070 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 IKBKEQ14164 716 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 HIC1Q14526 733 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 STXBP2Q15833 593 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 LEXMQ3ZCV2 418 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 MCMDC2Q4G0Z9 681 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 PTCRAQ6ISU1 281 aaPredicted RBP13.18□□□□□ -0.3
VPS33B-204ENST00000554660 MFSD6Q6ZSS7 791 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 MYOCDQ8IZQ8 938 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 TMEM87AQ8NBN3 555 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 RGS22Q8NE09 1264 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 FBXO22Q8NEZ5 403 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 NSUN6Q8TEA1 469 aaKnown RBP13.18□□□□□ -0.3
VPS33B-204ENST00000554660 KCNB2Q92953 911 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 KATNAL1Q9BW62 490 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 ANO2Q9NQ90 1003 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 DDX41Q9UJV9 622 aaKnown RBP13.18□□□□□ -0.3
VPS33B-204ENST00000554660 ZDHHC9Q9Y397 364 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 MRVI1Q9Y6F6 885 aa13.18□□□□□ -0.3
VPS33B-204ENST00000554660 CCDC171Q6TFL3 1326 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 PRR33A8MZF0 331 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms