RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 KDM4AO75164 1064 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 AMHP03971 560 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 PSEN2P49810 448 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 MRE11P49959 708 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 ARHGAP1Q07960 439 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 TCTN1Q2MV58 587 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 POTEBQ6S5H4 581 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 NEK9Q8TD19 979 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 RUFY2Q8WXA3 655 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 ZKSCAN3Q9BRR0 538 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 C17orf80Q9BSJ5 609 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 ZSWIM5Q9P217 1185 aa13.77□□□□□ -0.21
SRP54-203ENST00000553544 TRIP12Q14669 1992 aaPredicted RBP13.76□□□□□ -0.21
SRP54-203ENST00000553544 EMSYQ7Z589 1322 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 B4E1Z4 1266 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 SGSM2O43147 1006 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 LGR5O75473 907 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 EIF3JO75822 258 aaKnown RBP13.76□□□□□ -0.21
SRP54-203ENST00000553544 PTH1RQ03431 593 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 ZNF543Q08ER8 600 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 LAMC2Q13753 1193 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 MFSD10Q14728 455 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 KIAA0753Q2KHM9 967 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 USH1GQ495M9 461 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 CCDC178Q5BJE1 867 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 ZNF618Q5T7W0 954 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.76□□□□□ -0.21
SRP54-203ENST00000553544 IQCA1Q86XH1 822 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 SAMD11Q96NU1 681 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 TAAR1Q96RJ0 339 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 RMDN3Q96TC7 470 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 UPF3BQ9BZI7 483 aaKnown RBP13.76□□□□□ -0.21
SRP54-203ENST00000553544 PRKAG3Q9UGI9 489 aa13.76□□□□□ -0.21
SRP54-203ENST00000553544 DDX41Q9UJV9 622 aaKnown RBP13.76□□□□□ -0.21
SRP54-203ENST00000553544 H3BQ06 376 aaPredicted RBP13.75□□□□□ -0.21
SRP54-203ENST00000553544 NCK2O43639 380 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 PPFIA4O75335 1185 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 HTRA4P83105 476 aaPredicted RBP13.75□□□□□ -0.21
SRP54-203ENST00000553544 NHLH1Q02575 133 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 TRIM71Q2Q1W2 868 aaKnown RBP13.75□□□□□ -0.21
SRP54-203ENST00000553544 EPC2Q52LR7 807 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 GPATCH4Q5T3I0 446 aaKnown RBP13.75□□□□□ -0.21
SRP54-203ENST00000553544 EP400NLQ6ZTU2 488 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 MCF2L2Q86YR7 1114 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 MYOCDQ8IZQ8 938 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 BANK1Q8NDB2 785 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 TBC1D5Q92609 795 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 EMID1Q96A84 441 aaPredicted RBP13.75□□□□□ -0.21
SRP54-203ENST00000553544 ZSCAN10Q96SZ4 725 aaPredicted RBP13.75□□□□□ -0.21
SRP54-203ENST00000553544 KRT23Q9C075 422 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 CNNM2Q9H8M5 875 aa13.75□□□□□ -0.21
SRP54-203ENST00000553544 RSPH10B2B2RC85 870 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 H3BNC9 293 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 HAS3O00219 553 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 NEFLP07196 543 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 CYP21A2P08686 494 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 RSPH10BP0C881 870 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 GPM6BQ13491 265 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 TIGD5Q53EQ6 642 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 ARHGEF16Q5VV41 709 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 TRAF7Q6Q0C0 670 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 DHX37Q8IY37 1157 aaKnown RBP13.74□□□□□ -0.21
SRP54-203ENST00000553544 ENAHQ8N8S7 591 aaPredicted RBP13.74□□□□□ -0.21
SRP54-203ENST00000553544 PNMA1Q8ND90 353 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 DBF4BQ8NFT6 615 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 PPTC7Q8NI37 304 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 SYTL5Q8TDW5 730 aaPredicted RBP13.74□□□□□ -0.21
SRP54-203ENST00000553544 PABPC5Q96DU9 382 aaKnown RBP13.74□□□□□ -0.21
SRP54-203ENST00000553544 FBXL18Q96ME1 805 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 UBA5Q9GZZ9 404 aa13.74□□□□□ -0.21
SRP54-203ENST00000553544 ABCB11O95342 1321 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 F2P00734 622 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 GOLGA8HP0CJ92 632 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 THPOP40225 353 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 ZNF200P98182 395 aaPredicted RBP13.73□□□□□ -0.21
SRP54-203ENST00000553544 MBTPS1Q14703 1052 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 SEC23AQ15436 765 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 CENPQQ7L2Z9 268 aaPredicted RBP13.73□□□□□ -0.21
SRP54-203ENST00000553544 TMEM192Q8IY95 271 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 SP7Q8TDD2 431 aaPredicted RBP13.73□□□□□ -0.21
SRP54-203ENST00000553544 MAP4K1Q92918 833 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 MFSD14AQ96MC6 490 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 MRVI1Q9Y6F6 885 aa13.73□□□□□ -0.21
SRP54-203ENST00000553544 U3KPZ7 1027 aaPredicted RBP13.73□□□□□ -0.21
SRP54-203ENST00000553544 C19orf67A6NJJ6 358 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 NR3C2P08235 984 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 PLEKHG4Q58EX7 1191 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 TCEAL5Q5H9L2 206 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 KCNV1Q6PIU1 500 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 CYB5R4Q7L1T6 521 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 ADHFE1Q8IWW8 467 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 WNT8BQ93098 351 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 TOP1MTQ969P6 601 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 YME1L1Q96TA2 773 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 NSUN3Q9H649 340 aaKnown RBP13.72□□□□□ -0.21
SRP54-203ENST00000553544 KAT14Q9H8E8 782 aa13.72□□□□□ -0.21
SRP54-203ENST00000553544 MRPL11Q9Y3B7 192 aaKnown RBP13.72□□□□□ -0.21
SRP54-203ENST00000553544 WDFY4Q6ZS81 3184 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 UPP2O95045 317 aa13.71□□□□□ -0.21
SRP54-203ENST00000553544 ZNF286BP0CG31 522 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms