RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, human

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-208	ENST00000551691	ARMCX6	Q7L4S7	300 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	TTC6	Q86TZ1	520 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	FERMT3	Q86UX7	667 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	LRRC47	Q8N1G4	583 aa	Known RBP	4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	C19orf47	Q8N9M1	422 aa	Known RBP	4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	SLC17A8	Q8NDX2	589 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	ASB11	Q8WXH4	323 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	LTV1	Q96GA3	475 aa	Predicted RBP	4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	HSPA12B	Q96MM6	686 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	ATP13A1	Q9HD20	1204 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	G3BP2	Q9UN86	482 aa	Known RBP	4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	PLAA	Q9Y263	795 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	PTCH2	Q9Y6C5	1203 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	VIRMA	Q69YN4	1812 aa	Known RBP	4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	KIAA1551	Q9HCM1	1747 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	SPATA31E1	Q6ZUB1	1445 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	PITPNM2	Q9BZ72	1349 aa		4.97	□□□□□ -1.61
LIMA1-208	ENST00000551691	ANKRD36B	Q8N2N9	1353 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	USP47	Q96K76	1375 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	CCDC7	Q96M83	1385 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691		B2RBV5	119 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691		H3BS24	57 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	DDN	O94850	711 aa	Predicted RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	ZNF865	P0CJ78	1059 aa	Predicted RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	CDK8	P49336	464 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	FXR1	P51114	621 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	PTPN11	Q06124	597 aa	Predicted RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	INPP5A	Q14642	412 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	WIPI1	Q5MNZ9	446 aa	Predicted RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	ZBTB37	Q5TC79	503 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	CYP4F22	Q6NT55	531 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	CDC37L1	Q7L3B6	337 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	HDX	Q7Z353	690 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	RBBP8NL	Q8NC74	664 aa	Predicted RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	LINC00116	Q8NCU8	138 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	FAM84A	Q96KN4	292 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	KANSL2	Q9H9L4	492 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	FBRS	Q9HAH7	460 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	PRDM5	Q9NQX1	630 aa	Predicted RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	DDX56	Q9NY93	547 aa	Known RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	TCEAL9	Q9UHQ7	104 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	TPX2	Q9ULW0	747 aa	Known RBP	4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	SNX11	Q9Y5W9	270 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	PKD1L3	Q7Z443	1732 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	TRPM1	Q7Z4N2	1603 aa		4.96	□□□□□ -1.62
LIMA1-208	ENST00000551691	LY75	O60449	1722 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	FAM86C2P	A6NEL3	165 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	RASSF10	A6NK89	507 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	SLITRK5	O94991	958 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	HTR3B	O95264	441 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	APP	P05067	770 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	NAT2	P11245	290 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	PLCG1	P19174	1290 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	PLEKHG6	Q3KR16	790 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	TMEM67	Q5HYA8	995 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	ODR4	Q5SWX8	454 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	AXDND1	Q5T1B0	1012 aa	Predicted RBP	4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	WWC2	Q6AWC2	1192 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	MPZL3	Q6UWV2	235 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	RUFY4	Q6ZNE9	571 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	SPATC1	Q76KD6	591 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	XAGE3	Q8WTP9	111 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	CHAC2	Q8WUX2	184 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	JDP2	Q8WYK2	163 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	PPP1R14A	Q96A00	147 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	GPR101	Q96P66	508 aa	Predicted RBP	4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	DIRC2	Q96SL1	478 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	CDC6	Q99741	560 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	MIPEP	Q99797	713 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	PHAX	Q9H814	394 aa	Known RBP	4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	EHMT1	Q9H9B1	1298 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	HOMER2	Q9NSB8	354 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	CACNA2D2	Q9NY47	1150 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	KLHL3	Q9UH77	587 aa		4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	ABT1	Q9ULW3	272 aa	Known RBP	4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	CPSF1	Q10570	1443 aa	Known RBP	4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	TNRC6C	Q9HCJ0	1690 aa	Known RBP	4.95	□□□□□ -1.62
LIMA1-208	ENST00000551691	EIF3A	Q14152	1382 aa	Known RBP	4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	ABCC6	O95255	1503 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	USP54	Q70EL1	1684 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	QRICH2	Q9H0J4	1663 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691		A0A1W2PQH9	124 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	KRTAP9-7	A8MTY7	169 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	FAM155A	B1AL88	458 aa	Predicted RBP	4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	IGF2BP3	O00425	579 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	RAG1	P15918	1043 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	CFP	P27918	469 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	SOX5	P35711	763 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	RAP1GAP	P47736	663 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	MASP1	P48740	699 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	TMF1	P82094	1093 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	RING1	Q06587	406 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	SQSTM1	Q13501	440 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	ITPK1	Q13572	414 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	NKG7	Q16617	165 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	LRFN4	Q6PJG9	635 aa		4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.94	□□□□□ -1.62
LIMA1-208	ENST00000551691	CILP2	Q8IUL8	1156 aa		4.94	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms