RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 USP51Q70EK9 711 aa5.95□□□□□ -1.46
VPS29-205ENST00000548539 SPRED1Q7Z699 444 aa5.95□□□□□ -1.46
VPS29-205ENST00000548539 BVESQ8NE79 360 aa5.95□□□□□ -1.46
VPS29-205ENST00000548539 SGSM3Q96HU1 749 aa5.95□□□□□ -1.46
VPS29-205ENST00000548539 CDC6Q99741 560 aa5.95□□□□□ -1.46
VPS29-205ENST00000548539 PRR13Q9NZ81 148 aa5.95□□□□□ -1.46
VPS29-205ENST00000548539 TRAV20A0A0B4J274 112 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 NOP56O00567 594 aaKnown RBP5.94□□□□□ -1.46
VPS29-205ENST00000548539 KCNH1O95259 989 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 NCLP19338 710 aaKnown RBP5.94□□□□□ -1.46
VPS29-205ENST00000548539 ACVRL1P37023 503 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 HSP90AA2PQ14568 343 aaPredicted RBP5.94□□□□□ -1.46
VPS29-205ENST00000548539 FAM209AQ5JX71 171 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 CYP2R1Q6VVX0 501 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 Q8N1X5 172 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 FIBCD1Q8N539 461 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 BTN2A2Q8WVV5 523 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 EXOC2Q96KP1 924 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 ZDHHC15Q96MV8 337 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 AARSD1Q9BTE6 412 aaKnown RBP5.94□□□□□ -1.46
VPS29-205ENST00000548539 SLC12A9Q9BXP2 914 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 SLKQ9H2G2 1235 aaPredicted RBP5.94□□□□□ -1.46
VPS29-205ENST00000548539 SPATA6Q9NWH7 488 aaPredicted RBP5.94□□□□□ -1.46
VPS29-205ENST00000548539 CGGBP1Q9UFW8 167 aaPredicted RBP5.94□□□□□ -1.46
VPS29-205ENST00000548539 CD2APQ9Y5K6 639 aa5.94□□□□□ -1.46
VPS29-205ENST00000548539 PPM1GO15355 546 aaPredicted RBP5.93□□□□□ -1.46
VPS29-205ENST00000548539 PRODHO43272 600 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 FZD7O75084 574 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 PMLP29590 882 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 GYS2P54840 703 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 CORO7P57737 925 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 KIAA2012Q0VF49 1180 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 TCEA2Q15560 299 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 FILIP1Q7Z7B0 1213 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 KIAA0907Q7Z7F0 614 aaPredicted RBP5.93□□□□□ -1.46
VPS29-205ENST00000548539 SMARCC2Q8TAQ2 1214 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 ADAMTS17Q8TE56 1095 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 KISS1RQ969F8 398 aaPredicted RBP5.93□□□□□ -1.46
VPS29-205ENST00000548539 ZBTB8AQ96BR9 441 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 NOX5Q96PH1 765 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 EMC9Q9Y3B6 208 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 ZNF536O15090 1300 aa5.93□□□□□ -1.46
VPS29-205ENST00000548539 TRBV23-1A0A0A0MS06 115 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 VAMP4O75379 141 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 SF1Q15637 639 aaKnown RBP5.92□□□□□ -1.46
VPS29-205ENST00000548539 DPY19L1Q2PZI1 675 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 RNF187Q5TA31 235 aaPredicted RBP5.92□□□□□ -1.46
VPS29-205ENST00000548539 CRIP3Q6Q6R5 217 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 GLB1LQ6UWU2 654 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 TRIM59Q8IWR1 403 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 LGI4Q8N135 537 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 ARHGEF39Q8N4T4 335 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 MRGPRX3Q96LB0 322 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 IPO9Q96P70 1041 aaKnown RBP5.92□□□□□ -1.46
VPS29-205ENST00000548539 FEZ1Q99689 392 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 IER2Q9BTL4 223 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 BCAS3Q9H6U6 928 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 ST6GALNAC2Q9UJ37 374 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 FHOD1Q9Y613 1164 aa5.92□□□□□ -1.46
VPS29-205ENST00000548539 H0Y8X5 98 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 FGF10O15520 208 aaPredicted RBP5.91□□□□□ -1.46
VPS29-205ENST00000548539 HSP90B1P14625 803 aaKnown RBP5.91□□□□□ -1.46
VPS29-205ENST00000548539 NOP2P46087 812 aaKnown RBP5.91□□□□□ -1.46
VPS29-205ENST00000548539 LONRF2Q1L5Z9 754 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 RGL3Q3MIN7 710 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 CRB2Q5IJ48 1285 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 GTF2IRD2BQ6EKJ0 949 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 NSMFQ6X4W1 530 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 GTF2IRD2Q86UP8 949 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 CABP7Q86V35 215 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 FAM124AQ86V42 546 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 NLGN2Q8NFZ4 835 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 TSPAN17Q96FV3 270 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 RCC1LQ96I51 464 aaKnown RBP5.91□□□□□ -1.46
VPS29-205ENST00000548539 GPATCH3Q96I76 525 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 DHRS4Q9BTZ2 278 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 INVSQ9Y283 1065 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 MRPS23Q9Y3D9 190 aaKnown RBP5.91□□□□□ -1.46
VPS29-205ENST00000548539 TSC22D4Q9Y3Q8 395 aa5.91□□□□□ -1.46
VPS29-205ENST00000548539 A0A087WZG4 1122 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 BLACEA4D250 179 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 RAPGEF3O95398 923 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 TBC1D8O95759 1140 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 PABPC1P11940 636 aaKnown RBP5.9□□□□□ -1.46
VPS29-205ENST00000548539 KCNJ6P48051 423 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 BORAQ6PGQ7 559 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 POMZP3Q6PJE2 187 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 DHX37Q8IY37 1157 aaKnown RBP5.9□□□□□ -1.46
VPS29-205ENST00000548539 CRACR2BQ8N4Y2 399 aaPredicted RBP5.9□□□□□ -1.46
VPS29-205ENST00000548539 CPA5Q8WXQ8 436 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 OSBP2Q969R2 916 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 RXFP1Q9HBX9 757 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 IFT57Q9NWB7 429 aa5.9□□□□□ -1.46
VPS29-205ENST00000548539 DIS3Q9Y2L1 958 aaKnown RBP5.9□□□□□ -1.46
VPS29-205ENST00000548539 DNAJC6O75061 913 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 SNRPB2P08579 225 aaKnown RBP5.89□□□□□ -1.47
VPS29-205ENST00000548539 GLI4P10075 376 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 FGFR1P11362 822 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 ECI1P42126 302 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 CACNB2Q08289 660 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms