RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 FAM177A1Q8N128 213 aaPredicted RBP4.7□□□□□ -1.66
USP28-210ENST00000542033 Q8N1Y9 231 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 NLGN1Q8N2Q7 840 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 SYNPOQ8N3V7 929 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 SEC14L1Q92503 715 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 MRPL4Q9BYD3 311 aaKnown RBP4.7□□□□□ -1.66
USP28-210ENST00000542033 EPB41L1Q9H4G0 881 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 NCOA5Q9HCD5 579 aaKnown RBP4.7□□□□□ -1.66
USP28-210ENST00000542033 FANCLQ9NW38 375 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 FBLN5Q9UBX5 448 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 FBXL7Q9UJT9 491 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 FAN1Q9Y2M0 1017 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 X6R8D5 127 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 ASXL2Q76L83 1435 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 IRS2Q9Y4H2 1338 aa4.7□□□□□ -1.66
USP28-210ENST00000542033 TLDC2A0PJX2 215 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 FAM47E-STBD1D6RA91 191 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 IRS4O14654 1257 aaPredicted RBP4.69□□□□□ -1.66
USP28-210ENST00000542033 PLD2O14939 933 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 SOD2P04179 222 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 PI3P19957 117 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 PAK1Q13153 545 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 TCERG1LQ5VWI1 586 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 GIMAP6Q6P9H5 292 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 C16orf86Q6ZW13 317 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 SIAH1Q8IUQ4 282 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 IGDCC3Q8IVU1 814 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 MAGEB10Q96LZ2 347 aaPredicted RBP4.69□□□□□ -1.66
USP28-210ENST00000542033 KRTAP17-1Q9BYP8 105 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 SLC52A2Q9HAB3 445 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 RXFP1Q9HBX9 757 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 PCDHA5Q9Y5H7 936 aa4.69□□□□□ -1.66
USP28-210ENST00000542033 KRIT1O00522 736 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 PPP1R12AO14974 1030 aaPredicted RBP4.68□□□□□ -1.66
USP28-210ENST00000542033 MAFKO60675 156 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 RAPGEF3O95398 923 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 CRTAMO95727 393 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 ZSCAN22P10073 491 aaPredicted RBP4.68□□□□□ -1.66
USP28-210ENST00000542033 GNAT1P11488 350 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 SSPNQ14714 243 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 FNDC3BQ53EP0 1204 aaKnown RBP4.68□□□□□ -1.66
USP28-210ENST00000542033 TRIM61Q5EBN2 209 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 CNKSR3Q6P9H4 555 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 CILP2Q8IUL8 1156 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 ZC3H7AQ8IWR0 971 aaKnown RBP4.68□□□□□ -1.66
USP28-210ENST00000542033 KCNJ15Q99712 375 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 JAM3Q9BX67 310 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 IRF2BPLQ9H1B7 796 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 PPARGC1AQ9UBK2 798 aaKnown RBP4.68□□□□□ -1.66
USP28-210ENST00000542033 TBX22Q9Y458 520 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 PCDHA9Q9Y5H5 950 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 PCDHA8Q9Y5H6 950 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 HCFC2Q9Y5Z7 792 aa4.68□□□□□ -1.66
USP28-210ENST00000542033 HGSO14964 777 aaPredicted RBP4.67□□□□□ -1.66
USP28-210ENST00000542033 GSTA4O15217 222 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 ASGR2P07307 311 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 FBLN1P23142 703 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 AFF3P51826 1226 aaKnown RBP4.67□□□□□ -1.66
USP28-210ENST00000542033 NCKAP1LP55160 1127 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 ST5P78524 1137 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 SPIRE1Q08AE8 756 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 TAF7LQ5H9L4 462 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 STEAP3Q658P3 488 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 BRAPQ7Z569 592 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 AMIGO3Q86WK7 504 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 C1QL4Q86Z23 238 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 GSTCDQ8NEC7 633 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 SLC7A14Q8TBB6 771 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 CPA5Q8WXQ8 436 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 IPPKQ9H8X2 491 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 PCDH18Q9HCL0 1135 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 SIT1Q9Y3P8 196 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 NUB1Q9Y5A7 615 aa4.67□□□□□ -1.66
USP28-210ENST00000542033 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.66□□□□□ -1.66
USP28-210ENST00000542033 ARVCFO00192 962 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 ENPP3O14638 875 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 KCNQ2O43526 872 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 CLSTN1O94985 981 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 RASGRP1O95267 797 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 SRGAP2CP0DJJ0 459 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 IGFBP6P24592 240 aaPredicted RBP4.66□□□□□ -1.66
USP28-210ENST00000542033 PMLP29590 882 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 CAP1Q01518 475 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 FAM47CQ5HY64 1035 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 SDE2Q6IQ49 451 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 ETV3LQ6ZN32 361 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 MILR1Q7Z6M3 343 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 ZC3H18Q86VM9 953 aaKnown RBP4.66□□□□□ -1.66
USP28-210ENST00000542033 FAM129CQ86XR2 697 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 TMEFF1Q8IYR6 380 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 PIP4K2CQ8TBX8 421 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 PANK1Q8TE04 598 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.66□□□□□ -1.66
USP28-210ENST00000542033 FBXW5Q969U6 566 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 DDX11Q96FC9 970 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 PWWP2AQ96N64 755 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 YIPF4Q9BSR8 244 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 CDIP1Q9H305 208 aa4.66□□□□□ -1.66
USP28-210ENST00000542033 NGRNQ9NPE2 291 aaKnown RBP4.66□□□□□ -1.66
USP28-210ENST00000542033 CATSPERZQ9NTU4 200 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms