RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 C21orf2O43822 256 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 RASA1P20936 1047 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 TXKP42681 527 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 DNM2P50570 870 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 RNASE9P60153 205 aaKnown RBP15.67■□□□□ 0.1
USP48-213ENST00000529637 ZBED6P86452 979 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 GUCY2DQ02846 1103 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 NONOQ15233 471 aaKnown RBP eCLIP15.67■□□□□ 0.13e-6■■■■□ 21.1
USP48-213ENST00000529637 CCDC170Q8IYT3 715 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 HPS3Q969F9 1004 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 C6orf50Q9HD87 102 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 F8W031 263 aaPredicted RBP15.67■□□□□ 0.1
USP48-213ENST00000529637 DNM1LO00429 736 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 TACC1O75410 805 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 OR52Z1P0C646 297 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 CDK8P49336 464 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 TRAPPC3LQ5T215 181 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 ZNF572Q7Z3I7 529 aaPredicted RBP15.67■□□□□ 0.1
USP48-213ENST00000529637 MIEF2Q96C03 454 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 DUSP9Q99956 384 aaKnown RBP15.67■□□□□ 0.1
USP48-213ENST00000529637 DDX20Q9UHI6 824 aaKnown RBP15.67■□□□□ 0.1
USP48-213ENST00000529637 ODF2LQ9ULJ1 636 aa15.67■□□□□ 0.1
USP48-213ENST00000529637 FRMPD2Q68DX3 1309 aaPredicted RBP15.67■□□□□ 0.1
USP48-213ENST00000529637 EEF1GP26641 437 aaKnown RBP15.66■□□□□ 0.1
USP48-213ENST00000529637 TM4SF1P30408 202 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 MDH1P40925 334 aaKnown RBP15.66■□□□□ 0.1
USP48-213ENST00000529637 GRAPQ13588 217 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 SPA17Q15506 151 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 CEP85LQ5SZL2 805 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 TTI2Q6NXR4 508 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 C2CD5Q86YS7 1000 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 GRAPLQ8TC17 118 aaPredicted RBP15.66■□□□□ 0.1
USP48-213ENST00000529637 LRRC15Q8TF66 581 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 CDK5RAP3Q96JB5 506 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 TLR10Q9BXR5 811 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.66■□□□□ 0.1
USP48-213ENST00000529637 C6orf229H3BNL8 230 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 TMC4Q7Z404 712 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 PIGSQ96S52 555 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 MARCH6O60337 910 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 E2F5Q15329 346 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 C6orf89Q6UWU4 347 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 YTHDF3Q7Z739 585 aaKnown RBP15.66■□□□□ 0.1
USP48-213ENST00000529637 UIMC1Q96RL1 719 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 OSBPL7Q9BZF2 842 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 LEMD3Q9Y2U8 911 aa15.66■□□□□ 0.1
USP48-213ENST00000529637 KLRC4O43908 158 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 ATP2C2O75185 946 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 HEXIM1O94992 359 aaKnown RBP15.65■□□□□ 0.1
USP48-213ENST00000529637 FCER1AP12319 257 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 PAX7P23759 505 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 GNA11P29992 359 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 QPCTQ16769 361 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 MFSD14BQ5SR56 506 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 OR2W6PQ8NHA6 318 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 TBCKQ8TEA7 893 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 MTMR8Q96EF0 704 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 HYOU1Q9Y4L1 999 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 OPLAHO14841 1288 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 EIF4A3P38919 411 aaKnown RBP15.65■□□□□ 0.1
USP48-213ENST00000529637 ITIH3Q06033 890 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 MIIPQ5JXC2 388 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 FAM196AQ6ZSG2 479 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 DYMQ7RTS9 669 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 KRT25Q7Z3Z0 450 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 CEP95Q96GE4 821 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 CALML4Q96GE6 196 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 PAGR1Q9BTK6 254 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 SLC39A2Q9NP94 309 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 HAUS2Q9NVX0 235 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 TMEM260Q9NX78 707 aa15.65■□□□□ 0.1
USP48-213ENST00000529637 NF2P35240 595 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 KIF11P52732 1056 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 ITGB3BPQ13352 177 aaPredicted RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 MICALCLQ6ZW33 695 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 NEK8Q86SG6 692 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 LRRC47Q8N1G4 583 aaKnown RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 PROCA1Q8NCQ7 364 aaPredicted RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 CYFIP2Q96F07 1278 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 CCDC114Q96M63 670 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 THAP9Q9H5L6 903 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 FAM207AQ9NSI2 230 aaPredicted RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 A0A1B0GUL6 1792 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 PALM3A6NDB9 673 aaPredicted RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 FAM107AO95990 144 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 STK4Q13043 487 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 WLSQ5T9L3 541 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 ANKRD40Q6AI12 368 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 REXO1Q8N1G1 1221 aaKnown RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 CASKIN2Q8WXE0 1202 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 CNOT6LQ96LI5 555 aaKnown RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 SCLT1Q96NL6 688 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 NOC4LQ9BVI4 516 aaKnown RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 TMOD1P28289 359 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 GPSM2P81274 684 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 GALNT17Q6IS24 598 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 CHADLQ6NUI6 762 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 SPATS2Q86XZ4 545 aaKnown RBP15.64■□□□□ 0.09
USP48-213ENST00000529637 ATP6V1G3Q96LB4 118 aa15.64■□□□□ 0.09
USP48-213ENST00000529637 CCSER1Q9C0I3 900 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms