RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CRYGNQ8WXF5 182 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 HPS3Q969F9 1004 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 NUCKS1Q9H1E3 243 aaKnown RBP16.49■□□□□ 0.23
NUP54-217ENST00000514987 NHEJ1Q9H9Q4 299 aaPredicted RBP16.49■□□□□ 0.23
NUP54-217ENST00000514987 KCNQ5Q9NR82 932 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 AGPAT5Q9NUQ2 364 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 MYO6Q9UM54 1294 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 PLAGL2Q9UPG8 496 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 SIK3Q9Y2K2 1263 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 FHOD1Q9Y613 1164 aa16.49■□□□□ 0.23
NUP54-217ENST00000514987 SCN9AQ15858 1988 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 A0A0U1RQJ8 604 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 CTAGE15A4D2H0 777 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 SPDYE3A6NKU9 549 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L15C9J2P7 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L13C9JLJ4 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L11C9JVI0 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L18D6R9N7 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L22D6RA61 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L17D6RBQ6 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L19D6RCP7 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L20D6RJB6 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 MEIS2O14770 477 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 NDUFB10O96000 172 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 CTAGE8P0CG41 777 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 BMP3P12645 472 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 CACNB3P54284 484 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 HERVK_113P62684 666 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 ARHGAP4P98171 946 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L24Q0WX57 530 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 SPA17Q15506 151 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 CCDC122Q5T0U0 273 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 USP17L6PQ6QN14 398 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 PPP4R3CPQ6ZMV5 832 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 LRRC55Q6ZSA7 311 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 CTAGE6Q86UF2 777 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 CTAGE4Q8IX94 777 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 ATRIPQ8WXE1 791 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 JAKMIP2Q96AA8 810 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 PARD6BQ9BYG5 372 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 TMOD2Q9NZR1 351 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 GUCA1BQ9UMX6 200 aa16.48■□□□□ 0.23
NUP54-217ENST00000514987 CIITAP33076 1130 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 SREBF1P36956 1147 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 ZCWPW2Q504Y3 356 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 CC2D1AQ6P1N0 951 aaPredicted RBP16.47■□□□□ 0.23
NUP54-217ENST00000514987 MSANTD4Q8NCY6 345 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 C7orf43Q8WVR3 580 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 HNRNPLLQ8WVV9 542 aaKnown RBP16.47■□□□□ 0.23
NUP54-217ENST00000514987 RPGRIP1Q96KN7 1286 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 CCDC42Q96M95 316 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 KIAA1024Q9UPX6 916 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 COL4A3BPQ9Y5P4 624 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 ANO9A1A5B4 782 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 USO1O60763 962 aaKnown RBP16.47■□□□□ 0.23
NUP54-217ENST00000514987 ERLIN1O75477 346 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 MARSP56192 900 aaKnown RBP16.47■□□□□ 0.23
NUP54-217ENST00000514987 AMPD2Q01433 879 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 KIF5AQ12840 1032 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 IKQ13123 557 aaPredicted RBP16.47■□□□□ 0.23
NUP54-217ENST00000514987 ECM1Q16610 540 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 MSL1Q68DK7 614 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 GPBP1Q86WP2 473 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 ETNPPLQ8TBG4 499 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 GBP3Q9H0R5 595 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 ARHGEF10LQ9HCE6 1279 aa16.47■□□□□ 0.23
NUP54-217ENST00000514987 FRMD3A2A2Y4 597 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 FAM196BA6NMK8 535 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 PIK3CDO00329 1044 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 SSBP05455 408 aaKnown RBP eCLIP16.46■□□□□ 0.23
NUP54-217ENST00000514987 CYP3A4P08684 503 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 RPA1P27694 616 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 VAV2P52735 878 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 CKAP4Q07065 602 aaKnown RBP16.46■□□□□ 0.23
NUP54-217ENST00000514987 PAPD7Q5XG87 772 aaKnown RBP16.46■□□□□ 0.23
NUP54-217ENST00000514987 NEK11Q8NG66 645 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 TDRD3Q9H7E2 651 aaKnown RBP16.46■□□□□ 0.23
NUP54-217ENST00000514987 RAB21Q9UL25 225 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 FAM184BQ9ULE4 1060 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 DNM3Q9UQ16 869 aa16.46■□□□□ 0.23
NUP54-217ENST00000514987 PSME4Q14997 1843 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 TRAF5O00463 557 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 LCA5LO95447 670 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 GH2P01242 217 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 KRT18P05783 430 aaKnown RBP16.45■□□□□ 0.22
NUP54-217ENST00000514987 CYP11B2P19099 503 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 KLK7P49862 253 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 AOC3Q16853 763 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 EDRF1Q3B7T1 1238 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 CCDC40Q4G0X9 1142 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 TRAPPC11Q7Z392 1133 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 SYN2Q92777 582 aaPredicted RBP16.45■□□□□ 0.22
NUP54-217ENST00000514987 EEF2KMTQ96G04 330 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 PURBQ96QR8 312 aaKnown RBP16.45■□□□□ 0.22
NUP54-217ENST00000514987 MMRN2Q9H8L6 949 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 PUF60Q9UHX1 559 aaKnown RBP16.45■□□□□ 0.22
NUP54-217ENST00000514987 PCDHA2Q9Y5H9 948 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 PCDHAC2Q9Y5I4 1007 aa16.45■□□□□ 0.22
NUP54-217ENST00000514987 E9PMD0 336 aa16.44■□□□□ 0.22
NUP54-217ENST00000514987 GDF11O95390 407 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms