RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 TXNP10599 105 aaKnown RBP12.36□□□□□ -0.43
COL6A3-214ENST00000493608 MRPL12P52815 198 aaKnown RBP12.36□□□□□ -0.43
COL6A3-214ENST00000493608 ITGA7Q13683 1181 aa12.36□□□□□ -0.43
COL6A3-214ENST00000493608 PWP2Q15269 919 aaKnown RBP12.36□□□□□ -0.43
COL6A3-214ENST00000493608 LY6KQ17RY6 165 aa12.36□□□□□ -0.43
COL6A3-214ENST00000493608 LRIT3Q3SXY7 679 aa12.36□□□□□ -0.43
COL6A3-214ENST00000493608 Q7L0L9 218 aa12.36□□□□□ -0.43
COL6A3-214ENST00000493608 NSUN6Q8TEA1 469 aaKnown RBP12.36□□□□□ -0.43
COL6A3-214ENST00000493608 TCEANC2Q96MN5 208 aa12.36□□□□□ -0.43
COL6A3-214ENST00000493608 PNMA6FA0A0J9YX94 578 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 PLEKHA8P1O95397 391 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 MYCLP12524 364 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-214ENST00000493608 HSD17B4P51659 736 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 EPHB4P54760 987 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 TTLL4Q14679 1199 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 PPP2R5BQ15173 497 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 STXBP2Q15833 593 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 ADCK5Q3MIX3 580 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 FCHSD1Q86WN1 690 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 FAM126BQ8IXS8 530 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 CCDC82Q8N4S0 544 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 CTCFLQ8NI51 663 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-214ENST00000493608 SCFD2Q8WU76 684 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 TATDN2Q93075 761 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 PPP1R12CQ9BZL4 782 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 TRPV6Q9H1D0 765 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 PXMP2Q9NR77 195 aa12.35□□□□□ -0.43
COL6A3-214ENST00000493608 hCG_1642624A0A1W2PR95 340 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 TLR3O15455 904 aaKnown RBP12.34□□□□□ -0.43
COL6A3-214ENST00000493608 CABYRO75952 493 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 TIMP1P01033 207 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 NEFLP07196 543 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 NR3C2P08235 984 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 CHMP4BP1P59074 171 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 TMTC2Q8N394 836 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 SRBD1Q8N5C6 995 aaKnown RBP12.34□□□□□ -0.43
COL6A3-214ENST00000493608 SLC43A3Q8NBI5 491 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 TMEM87BQ96K49 555 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 IWS1Q96ST2 819 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 TSR3Q9UJK0 312 aaKnown RBP12.34□□□□□ -0.43
COL6A3-214ENST00000493608 TBX21Q9UL17 535 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 MROH7Q68CQ1 1323 aa12.34□□□□□ -0.43
COL6A3-214ENST00000493608 GCOM1H8Y6P7 765 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-214ENST00000493608 NKRFO15226 690 aaKnown RBP eCLIP12.33□□□□□ -0.44
COL6A3-214ENST00000493608 SORBS3O60504 671 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 B4GALT4O60513 344 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 DDAH1O94760 285 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 CD4P01730 458 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 POLR2MP0CAP2 368 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 CPA1P15085 419 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 KIF5BP33176 963 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 CYP2C18P33260 490 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 LIFRP42702 1097 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 CPT1AP50416 773 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 PURAQ00577 322 aaKnown RBP12.33□□□□□ -0.44
COL6A3-214ENST00000493608 FPGSQ05932 587 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 RNF20Q5VTR2 975 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 CCDC62Q6P9F0 684 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 IL31RAQ8NI17 732 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 AFG1LQ8WV93 481 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 NEK1Q96PY6 1258 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 MAP3K14Q99558 947 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 MTA3Q9BTC8 594 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 MAF1Q9H063 256 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 POLR3EQ9NVU0 708 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 SLC12A7Q9Y666 1083 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 UMODL1Q5DID0 1318 aa12.33□□□□□ -0.44
COL6A3-214ENST00000493608 EIF3JO75822 258 aaKnown RBP12.32□□□□□ -0.44
COL6A3-214ENST00000493608 ACRP10323 421 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 CSF2RAP15509 400 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 PLCB2Q00722 1185 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 EXOSC10Q01780 885 aaKnown RBP12.32□□□□□ -0.44
COL6A3-214ENST00000493608 PGM5Q15124 567 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 NBPF20Q3BBV1 942 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 MICU3Q86XE3 530 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 DEFB123Q8N688 67 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 RRP36Q96EU6 259 aaKnown RBP12.32□□□□□ -0.44
COL6A3-214ENST00000493608 PDCD2LQ9BRP1 358 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 MTG1Q9BT17 334 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-214ENST00000493608 SPZ1Q9BXG8 430 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 DDX41Q9UJV9 622 aaKnown RBP12.32□□□□□ -0.44
COL6A3-214ENST00000493608 MRVI1Q9Y6F6 885 aa12.32□□□□□ -0.44
COL6A3-214ENST00000493608 TRIP12Q14669 1992 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-214ENST00000493608 SCN10AQ9Y5Y9 1956 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 A6NJR5 290 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 RGS20O76081 388 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 GH1P01241 217 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 CYP2C9P11712 490 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 CCL23P55773 120 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 GHRHRQ02643 423 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 ARHGAP1Q07960 439 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 TRAF1Q13077 416 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 BRDTQ58F21 947 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-214ENST00000493608 FAM47CQ5HY64 1035 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 MFSD5Q6N075 450 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 USP17L6PQ6QN14 398 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 C16orf59Q7L2K0 433 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 DHX32Q7L7V1 743 aaKnown RBP12.31□□□□□ -0.44
COL6A3-214ENST00000493608 VSIG10LQ86VR7 867 aa12.31□□□□□ -0.44
COL6A3-214ENST00000493608 FANCBQ8NB91 859 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms