RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 SERPINB3P29508 390 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 TRPC1P48995 793 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 NSUN2Q08J23 767 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 LBRQ14739 615 aaKnown RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 CHRNA2Q15822 529 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 WDR78Q5VTH9 848 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 RAD9BQ6WBX8 426 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 MPRIPQ6WCQ1 1025 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 TSEN2Q8NCE0 465 aaKnown RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 CASP10Q92851 521 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 RPGRIP1Q96KN7 1286 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 ZC3H4Q9UPT8 1303 aaKnown RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 JAK2O60674 1132 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 FGFR1OPO95684 399 aaKnown RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 KCNA2P16389 499 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 HLTFQ14527 1009 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 CYP26C1Q6V0L0 522 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 TMEM139Q8IV31 216 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 SLC17A8Q8NDX2 589 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 CEP70Q8NHQ1 597 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 DNAJC9Q8WXX5 260 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 USP6NLQ92738 828 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 IL1RAPL2Q9NP60 686 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 PLCB1Q9NQ66 1216 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 PNMA2Q9UL42 364 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 TMED5Q9Y3A6 229 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 TAF1P21675 1872 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 GPR75-ASB3A0A0A6YYF3 556 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 GCOM1H8Y6P7 765 aaPredicted RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 MYZAPP0CAP1 466 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 GHRP10912 638 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 PHKG2P15735 406 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 SARSP49591 514 aaKnown RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 CACNA2D1P54289 1103 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 SH3BGRP55822 239 aaPredicted RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 FXNQ16595 210 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 PROSER3Q2NL68 480 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 PABPC1LQ4VXU2 614 aaKnown RBP7.5□□□□□ -1.21
VPS13B-205ENST00000493587 BLOC1S2Q6QNY1 142 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 UNC5CLQ8IV45 518 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 SCUBE1Q8IWY4 988 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 DYDC2Q96IM9 177 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 ATP6V1G3Q96LB4 118 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 SLC39A3Q9BRY0 314 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 NDST4Q9H3R1 872 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 CARD8Q9Y2G2 431 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 ASB3Q9Y575 518 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 SYNRGQ9UMZ2 1314 aa7.5□□□□□ -1.21
VPS13B-205ENST00000493587 F6X3S4 739 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 ABLIM1O14639 778 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 TIMM44O43615 452 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 GSTA2P09210 222 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 BCRP11274 1271 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 TMED10P49755 219 aaKnown RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 NDUFA8P51970 172 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 PDE1CQ14123 709 aaPredicted RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 ADCK5Q3MIX3 580 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 SOGA3Q5TF21 947 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 CCNJLQ8IV13 435 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 SLC15A3Q8IY34 581 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 PDCD7Q8N8D1 485 aaKnown RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 UIMC1Q96RL1 719 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 ECT2Q9H8V3 914 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 ETNK2Q9NVF9 386 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 STIM2Q9P246 746 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 SEL1LQ9UBV2 794 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 ITGB1BP2Q9UKP3 347 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 HMGB1P1B2RPK0 211 aaPredicted RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 IKBKBO14920 756 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 SPTLC1O15269 473 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 SLC26A4O43511 780 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 ADARP55265 1226 aaKnown RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 RABL6Q3YEC7 729 aaPredicted RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 LACTB2Q53H82 288 aaPredicted RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 PPP4R3AQ6IN85 833 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 ZNF530Q6P9A1 599 aaPredicted RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 EMBQ6PCB8 327 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 CCT6BQ92526 530 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 PANX2Q96RD6 677 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 PSMB7Q99436 277 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 SYNCQ9H7C4 482 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 DKK3Q9UBP4 350 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 CD2APQ9Y5K6 639 aa7.49□□□□□ -1.21
VPS13B-205ENST00000493587 TNRC6CQ9HCJ0 1690 aaKnown RBP7.49□□□□□ -1.21
VPS13B-205ENST00000493587 POTEFA5A3E0 1075 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 HTR3EA5X5Y0 456 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 BOLA2-SMG1P6H3BVE0 249 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 CTNND1O60716 968 aaKnown RBP7.48□□□□□ -1.21
VPS13B-205ENST00000493587 STK10O94804 968 aaKnown RBP7.48□□□□□ -1.21
VPS13B-205ENST00000493587 IGKV5-2P06315 115 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 IDEP14735 1019 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 PSMA5P28066 241 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 TBL3Q12788 808 aaKnown RBP7.48□□□□□ -1.21
VPS13B-205ENST00000493587 PKN1Q16512 942 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 GLE1Q53GS7 698 aaKnown RBP7.48□□□□□ -1.21
VPS13B-205ENST00000493587 CCDC122Q5T0U0 273 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 BRWD3Q6RI45 1802 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 MIGA2Q7L4E1 593 aa7.48□□□□□ -1.21
VPS13B-205ENST00000493587 WDR17Q8IZU2 1322 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms