RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 CNR2P34972 360 aa5.1□□□□□ -1.59
CPSF3-205ENST00000489629 STAT5AP42229 794 aa5.1□□□□□ -1.59
CPSF3-205ENST00000489629 ADAM9Q13443 819 aa5.1□□□□□ -1.59
CPSF3-205ENST00000489629 SPATS1Q496A3 300 aa5.1□□□□□ -1.59
CPSF3-205ENST00000489629 ZC3H18Q86VM9 953 aaKnown RBP5.1□□□□□ -1.59
CPSF3-205ENST00000489629 TTLL6Q8N841 843 aa5.1□□□□□ -1.59
CPSF3-205ENST00000489629 DDX1Q92499 740 aaKnown RBP5.1□□□□□ -1.59
CPSF3-205ENST00000489629 RBM15Q96T37 977 aaKnown RBP eCLIP5.1□□□□□ -1.59
CPSF3-205ENST00000489629 NGRNQ9NPE2 291 aaKnown RBP5.1□□□□□ -1.59
CPSF3-205ENST00000489629 IGSF5Q9NSI5 407 aa5.1□□□□□ -1.59
CPSF3-205ENST00000489629 COA3Q9Y2R0 106 aaPredicted RBP5.1□□□□□ -1.59
CPSF3-205ENST00000489629 CCDC9Q9Y3X0 531 aaKnown RBP5.1□□□□□ -1.59
CPSF3-205ENST00000489629 HGSO14964 777 aaPredicted RBP5.09□□□□□ -1.59
CPSF3-205ENST00000489629 DLX3O60479 287 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 MSCO60682 206 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 ADRB1P08588 477 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 DNAJA1P31689 397 aaKnown RBP5.09□□□□□ -1.59
CPSF3-205ENST00000489629 DDR2Q16832 855 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 FAM26FQ5R3K3 315 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 STEAP3Q658P3 488 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 ANKS3Q6ZW76 656 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 ARRDC4Q8NCT1 418 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.09□□□□□ -1.59
CPSF3-205ENST00000489629 KCTD13Q8WZ19 329 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 ST7Q9NRC1 585 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 CLDND1Q9NY35 253 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 DTLQ9NZJ0 730 aa5.09□□□□□ -1.59
CPSF3-205ENST00000489629 ITGB3P05106 788 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 CHRNA2Q15822 529 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 RGL3Q3MIN7 710 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 TXNDC5Q8NBS9 432 aaKnown RBP5.08□□□□□ -1.6
CPSF3-205ENST00000489629 TOE1Q96GM8 510 aaKnown RBP5.08□□□□□ -1.6
CPSF3-205ENST00000489629 SGSM3Q96HU1 749 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 CHAMP1Q96JM3 812 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 GPR27Q9NS67 375 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 WASF3Q9UPY6 502 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 PCDHB4Q9Y5E5 795 aa5.08□□□□□ -1.6
CPSF3-205ENST00000489629 K7ESM1 405 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 AGRPO00253 132 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 LRG1P02750 347 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 ZNF28P17035 718 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 NKX3-2P78367 333 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 TEPPQ6URK8 271 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 HHIPL2Q6UWX4 724 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 DBX2Q6ZNG2 339 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 GGNQ86UU5 652 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 IER2Q9BTL4 223 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 SMOC1Q9H4F8 434 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 EPB41L1Q9H4G0 881 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 HSPBP1Q9NZL4 362 aa5.07□□□□□ -1.6
CPSF3-205ENST00000489629 MROH6A6NGR9 719 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 DDX3XO00571 662 aaKnown RBP eCLIP5.06□□□□□ -1.6
CPSF3-205ENST00000489629 DGKIO75912 1065 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 KIAA2012Q0VF49 1180 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 HSP90AA2PQ14568 343 aaPredicted RBP5.06□□□□□ -1.6
CPSF3-205ENST00000489629 NTRK3Q16288 839 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 TBC1D10BQ4KMP7 808 aaPredicted RBP5.06□□□□□ -1.6
CPSF3-205ENST00000489629 MCTP2Q6DN12 878 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 CYP4F22Q6NT55 531 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 RSPO2Q6UXX9 243 aaPredicted RBP5.06□□□□□ -1.6
CPSF3-205ENST00000489629 PHOSPHO1Q8TCT1 267 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 ARHGEF4Q9NR80 690 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 MYOTQ9UBF9 498 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 PPARGC1AQ9UBK2 798 aaKnown RBP5.06□□□□□ -1.6
CPSF3-205ENST00000489629 ASH2LQ9UBL3 628 aa5.06□□□□□ -1.6
CPSF3-205ENST00000489629 R3HCC1Q9Y3T6 440 aaKnown RBP5.06□□□□□ -1.6
CPSF3-205ENST00000489629 PLATP00750 562 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 FGFR1P11362 822 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 USP53Q70EK8 1073 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 PROSER1Q86XN7 944 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 ST13P5Q8NFI4 369 aaPredicted RBP5.05□□□□□ -1.6
CPSF3-205ENST00000489629 OSBP2Q969R2 916 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 MBD6Q96DN6 1003 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 YIPF4Q9BSR8 244 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 AARSD1Q9BTE6 412 aaKnown RBP5.05□□□□□ -1.6
CPSF3-205ENST00000489629 SSBP3Q9BWW4 388 aaPredicted RBP5.05□□□□□ -1.6
CPSF3-205ENST00000489629 JAM3Q9BX67 310 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 SLC6A20Q9NP91 592 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 INVSQ9Y283 1065 aa5.05□□□□□ -1.6
CPSF3-205ENST00000489629 C9orf118A6NHY6 69 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 IL13P35225 146 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 MAGEA10P43363 369 aaPredicted RBP5.04□□□□□ -1.6
CPSF3-205ENST00000489629 MLLT6P55198 1093 aaPredicted RBP5.04□□□□□ -1.6
CPSF3-205ENST00000489629 RAB33AQ14088 237 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 LGI4Q8N135 537 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 TTLL11Q8NHH1 800 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 PIP4K2CQ8TBX8 421 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 DCAF4Q8WV16 495 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 CLEC4DQ8WXI8 215 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 ZSWIM3Q96MP5 696 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 YTHDC1Q96MU7 727 aaKnown RBP5.04□□□□□ -1.6
CPSF3-205ENST00000489629 PHF20Q9BVI0 1012 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 KRTAP3-1Q9BYR8 98 aa5.04□□□□□ -1.6
CPSF3-205ENST00000489629 PDGFDQ9GZP0 370 aaPredicted RBP5.04□□□□□ -1.6
CPSF3-205ENST00000489629 IQCA1LA6NCM1 817 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 KRIT1O00522 736 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 PRODHO43272 600 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 PABPC1P11940 636 aaKnown RBP5.03□□□□□ -1.6
CPSF3-205ENST00000489629 ADAM17P78536 824 aa5.03□□□□□ -1.6
CPSF3-205ENST00000489629 HABP4Q5JVS0 413 aaKnown RBP5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms